KEGG   PATHWAY: ndn00630
Entry
ndn00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Neisseria dentiae
Class
Metabolism; Carbohydrate metabolism
Pathway map
ndn00630  Glyoxylate and dicarboxylate metabolism
ndn00630

Module
ndn_M00012  Glyoxylate cycle [PATH:ndn00630]
ndn_M00621  Glycine cleavage system [PATH:ndn00630]
Other DBs
GO: 0046487 0043648
Organism
Neisseria dentiae [GN:ndn]
Gene
H3L92_10525  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
H3L92_07535  malate synthase G [KO:K01638] [EC:2.3.3.9]
H3L92_05850  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
H3L92_05820  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
H3L92_10320  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
H3L92_00020  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
H3L92_10230  catalase [KO:K03781] [EC:1.11.1.6]
H3L92_11530  D-2-hydroxyacid dehydrogenase [KO:K00018] [EC:1.1.1.29]
H3L92_08805  HAD-IA family hydrolase [KO:K01091] [EC:3.1.3.18]
H3L92_06365  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
H3L92_10305  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
H3L92_03100  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
H3L92_08220  gcvP; aminomethyl-transferring glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
H3L92_09425  gcvT; glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
H3L92_07505  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
H3L92_02095  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
H3L92_05800  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
H3L92_09415  gcvH; glycine cleavage system protein GcvH [KO:K02437]
H3L92_01705  glycerate kinase [KO:K00865] [EC:2.7.1.165]
H3L92_03705  bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
H3L92_05960  fdnG; formate dehydrogenase-N subunit alpha [KO:K00123] [EC:1.17.1.9]
H3L92_05955  fdxH; formate dehydrogenase subunit beta [KO:K00124]
H3L92_05950  formate dehydrogenase subunit gamma [KO:K00127]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
ndn00010  Glycolysis / Gluconeogenesis
ndn00020  Citrate cycle (TCA cycle)
ndn00030  Pentose phosphate pathway
ndn00071  Fatty acid degradation
ndn00230  Purine metabolism
ndn00250  Alanine, aspartate and glutamate metabolism
ndn00260  Glycine, serine and threonine metabolism
ndn00620  Pyruvate metabolism
ndn00710  Carbon fixation by Calvin cycle
ndn00750  Vitamin B6 metabolism
ndn00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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