KEGG   PATHWAY: nen00630
Entry
nen00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Neorhizobium sp. NCHU2750
Class
Metabolism; Carbohydrate metabolism
Pathway map
nen00630  Glyoxylate and dicarboxylate metabolism
nen00630

Module
nen_M00012  Glyoxylate cycle [PATH:nen00630]
nen_M00621  Glycine cleavage system [PATH:nen00630]
nen_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:nen00630]
Other DBs
GO: 0046487 0043648
Organism
Neorhizobium sp. NCHU2750 [GN:nen]
Gene
NCHU2750_03150  aceA; isocitrate lyase [KO:K01637] [EC:4.1.3.1]
NCHU2750_37080  acs; acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
NCHU2750_51010  aceB; malate synthase [KO:K01638] [EC:2.3.3.9]
NCHU2750_37740  aceB; malate synthase [KO:K01638] [EC:2.3.3.9]
NCHU2750_34220  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
NCHU2750_20040  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
NCHU2750_34740  acnA; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
NCHU2750_43220  acnB; aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
NCHU2750_01410  phbA; acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
NCHU2750_35370  phbA; acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
NCHU2750_35360  phbB; acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
NCHU2750_12890  methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
NCHU2750_38040  pccA; propionyl-CoA carboxylase alpha chain [KO:K01965] [EC:6.4.1.3]
NCHU2750_38150  pccB; propionyl-CoA carboxylase beta chain [KO:K01966] [EC:6.4.1.3 2.1.3.15]
NCHU2750_50100  bccA; acetyl-CoA carboxylase [KO:K11263] [EC:6.4.1.2 6.4.1.3 6.3.4.14]
NCHU2750_38010  mutB; methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
NCHU2750_03610  glcD; glycolate oxidase subunit [KO:K00104] [EC:1.1.99.14]
NCHU2750_03620  glcE; glycolate oxidase subunit [KO:K11472] [EC:1.1.99.14]
NCHU2750_03630  glcF; glycolate oxidase iron-sulfur subunit [KO:K11473] [EC:1.1.99.14]
NCHU2750_52440  katE; catalase [KO:K03781] [EC:1.11.1.6]
NCHU2750_58480  katE; catalase [KO:K03781] [EC:1.11.1.6]
NCHU2750_38930  2-hydroxyacid dehydrogenase [KO:K00015] [EC:1.1.1.26]
NCHU2750_32370  ghrA; glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
NCHU2750_41280  ghrA; glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
NCHU2750_35910  ghrA; glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
NCHU2750_39410  ghrA; glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
NCHU2750_00890  hprA; glycerate dehydrogenase [KO:K00018] [EC:1.1.1.29]
NCHU2750_17120  gph; phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
NCHU2750_19580  gph; phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
NCHU2750_04040  gph; phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
NCHU2750_08840  glnA; glutamine synthetase [KO:K01915] [EC:6.3.1.2]
NCHU2750_17570  glnA; glutamine synthetase [KO:K01915] [EC:6.3.1.2]
NCHU2750_25390  glnA; glutamine synthetase [KO:K01915] [EC:6.3.1.2]
NCHU2750_03100  glnA; glutamine synthetase [KO:K01915] [EC:6.3.1.2]
NCHU2750_03380  glnA; glutamine synthetase [KO:K01915] [EC:6.3.1.2]
NCHU2750_11960  glnA; glutamine synthetase [KO:K01915] [EC:6.3.1.2]
NCHU2750_51060  glyA; glycine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
NCHU2750_10970  glyA; glycine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
NCHU2750_32030  glyA; glycine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
NCHU2750_19650  gcvP; glycine cleavage system protein P2 [KO:K00281] [EC:1.4.4.2]
NCHU2750_19630  gcvT; glycine cleavage system protein T [KO:K00605] [EC:2.1.2.10]
NCHU2750_34150  lpdA; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
NCHU2750_19920  lpdA; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
NCHU2750_19640  gcvH; glycine cleavage system component H [KO:K02437]
NCHU2750_31080  garR; 2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
NCHU2750_44980  ttuD; hydroxypyruvate reductase [KO:K11529] [EC:2.7.1.165]
NCHU2750_41310  ttuC; tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
NCHU2750_42770  ttuC; tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
NCHU2750_41520  kdgA; 2-dehydro-3-deoxy-6-phosphogalactonate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
NCHU2750_29140  kdgA; 2-dehydro-3-deoxy-6-phosphogalactonate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
NCHU2750_43610  fdsD; formate dehydrogenase delta subunit [KO:K00126] [EC:1.17.1.9]
NCHU2750_43600  fdoG; formate dehydrogenase major subunit [KO:K00123] [EC:1.17.1.9]
NCHU2750_43590  fdoH; formate dehydrogenase iron-sulfur subunit [KO:K00124]
NCHU2750_43580  fdoI; formate dehydrogenase gamma subunit [KO:K00127]
NCHU2750_42400  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
NCHU2750_36300  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
nen00010  Glycolysis / Gluconeogenesis
nen00020  Citrate cycle (TCA cycle)
nen00030  Pentose phosphate pathway
nen00053  Ascorbate and aldarate metabolism
nen00071  Fatty acid degradation
nen00230  Purine metabolism
nen00250  Alanine, aspartate and glutamate metabolism
nen00260  Glycine, serine and threonine metabolism
nen00620  Pyruvate metabolism
nen00710  Carbon fixation by Calvin cycle
nen00750  Vitamin B6 metabolism
nen00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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