KEGG   PATHWAY: ngg00630
Entry
ngg00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Neorhizobium galegae bv. orientalis HAMBI 540
Class
Metabolism; Carbohydrate metabolism
Pathway map
ngg00630  Glyoxylate and dicarboxylate metabolism
ngg00630

Module
ngg_M00012  Glyoxylate cycle [PATH:ngg00630]
ngg_M00621  Glycine cleavage system [PATH:ngg00630]
ngg_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:ngg00630]
Other DBs
GO: 0046487 0043648
Organism
Neorhizobium galegae bv. orientalis HAMBI 540 [GN:ngg]
Gene
RG540_CH02310  Isocitrate lyase [KO:K01637] [EC:4.1.3.1]
RG540_CH03840  Acyl-CoA synthetase/AMP-acid ligase [KO:K01895] [EC:6.2.1.1]
RG540_CH40260  Acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
RG540_CH40940  Malate synthase G [KO:K01638] [EC:2.3.3.9]
RG540_CH36730  Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
RG540_CH15910  Citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
RG540_CH18490  Citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
RG540_CH18500  citA; Citrate synthase II CitA [KO:K01647] [EC:2.3.3.1]
RG540_CH37230  Aconitate hydratase [KO:K01681] [EC:4.2.1.3]
RG540_PA04860  Putative 3-ketoacyl-CoA thiolase (Fatty oxidation complex beta subunit) (Beta-ketothiolase) (Acetyl-CoA acyltransferase) (FadA-like) [KO:K00626] [EC:2.3.1.9]
RG540_CH38330  Thiolase [KO:K00626] [EC:2.3.1.9]
RG540_CH22780  Acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
RG540_CH37980  Acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
RG540_CH37970  Acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
RG540_CH12230  Methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
RG540_CH41560  Propionyl-CoA carboxylase, alpha subunit [KO:K01965] [EC:6.4.1.3]
RG540_CH41540  Propionyl-CoA carboxylase, beta subunit [KO:K01966] [EC:6.4.1.3 2.1.3.15]
RG540_CH41570  Methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
RG540_CH03240  glcD; Glycolate oxidase, subunit GlcD [KO:K00104] [EC:1.1.99.14]
RG540_CH03250  glcE; Glycolate oxidase, subunit GlcE [KO:K11472] [EC:1.1.99.14]
RG540_CH03260  Glycolate oxidase, iron-sulfur subunit [KO:K11473] [EC:1.1.99.14]
RG540_CH42900  Glyoxylate reductase [KO:K00015] [EC:1.1.1.26]
RG540_PA08370  D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding protein [KO:K12972] [EC:1.1.1.79 1.1.1.81]
RG540_CH43510  D-isomer specific 2-hydroxyacid dehydrogenase [KO:K12972] [EC:1.1.1.79 1.1.1.81]
RG540_CH00930  Putative 2-hydroxyacid dehydrogenase [KO:K00018] [EC:1.1.1.29]
RG540_CH19040  Hydrolase [KO:K01091] [EC:3.1.3.18]
RG540_CH16900  Phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
RG540_PA06340  5'-nucleotidase (Nucleoside 5'-monophosphatephosphohydrolase) [KO:K01091] [EC:3.1.3.18]
RG540_CH04430  HAD-superfamily hydrolase, subfamily IA, variant 1 [KO:K01091] [EC:3.1.3.18]
RG540_CH09270  Glutamate--putrescine ligase [KO:K01915] [EC:6.3.1.2]
RG540_CH18030  Glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
RG540_CH02240  Glutamate--putrescine ligase [KO:K01915] [EC:6.3.1.2]
RG540_CH27680  Glutamine synthetase [KO:K01915] [EC:6.3.1.2]
RG540_CH22250  Glutamine synthetase glnA4 [KO:K01915] [EC:6.3.1.2]
RG540_CH11270  Glycine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
RG540_CH19160  Glycine dehydrogenase [decarboxylating] [KO:K00281] [EC:1.4.4.2]
RG540_CH19140  Aminomethyltransferase [KO:K00605] [EC:2.1.2.10]
RG540_CH28870  Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
RG540_CH36650  Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
RG540_CH16020  Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
RG540_CH19150  Glycine cleavage system H protein [KO:K02437]
RG540_CH29410  Hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
RG540_PA03190  Hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
RG540_PA02790  2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
RG540_PA00700  Hydroxypyruvate reductase protein [KO:K11529] [EC:2.7.1.165]
RG540_CH19350  Tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
RG540_PA08400  Tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
RG540_CH31810  Keto-hydroxyglutarate-aldolase/keto-deoxy-phos phogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
RG540_CH36450  NAD-dependent formate dehydrogenase delta subunit [KO:K00126] [EC:1.17.1.9]
RG540_CH36470  NAD-dependent formate dehydrogenase alpha subunit [KO:K00123] [EC:1.17.1.9]
RG540_CH36480  Formate dehydrogenase, beta subunit [KO:K00124]
RG540_CH36490  NADH dehydrogenase (Ubiquinone) 24 kDa subunit [KO:K00127]
RG540_CH42140  Arylformamidase [KO:K01432] [EC:3.5.1.9]
RG540_CH39390  Formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
RG540_PA06830  Formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
RG540_PA15090  Formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
RG540_PA03540  N-formylglutamate deformylase [KO:K01458] [EC:3.5.1.68]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
ngg00010  Glycolysis / Gluconeogenesis
ngg00020  Citrate cycle (TCA cycle)
ngg00030  Pentose phosphate pathway
ngg00053  Ascorbate and aldarate metabolism
ngg00071  Fatty acid degradation
ngg00230  Purine metabolism
ngg00250  Alanine, aspartate and glutamate metabolism
ngg00260  Glycine, serine and threonine metabolism
ngg00620  Pyruvate metabolism
ngg00710  Carbon fixation by Calvin cycle
ngg00750  Vitamin B6 metabolism
ngg00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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