KEGG   PATHWAY: ngi03008
Entry
ngi03008                    Pathway                                
Name
Ribosome biogenesis in eukaryotes - Nannospalax galili (Upper Galilee mountains blind mole rat)
Description
Ribosomes are the cellular factories responsible for making proteins. In eukaryotes, ribosome biogenesis involves the production and correct assembly of four rRNAs and about 80 ribosomal proteins. It requires hundreds of factors not present in the mature particle. In the absence of these proteins, ribosome biogenesis is stalled and cell growth is terminated even under optimal growth conditions. The primary pre-rRNA transcript is assembled into the 90S pre-ribosome, which contains both 40S and 60S assembly factors. Within this complex, the pre-rRNA is cleaved. pre-60S ribosomes are subjected to several sequential processing steps in the nucleoplasm involving numerous assembly intermediates before it is exported to the cytoplasm and matured into the 60S ribosomal subunit. The pre-40S ribosome is matured to the small ribosomal subunit in the cytoplasm by cleavage.
Class
Genetic Information Processing; Translation
Pathway map
ngi03008  Ribosome biogenesis in eukaryotes
ngi03008

Organism
Nannospalax galili (Upper Galilee mountains blind mole rat) [GN:ngi]
Gene
103724441  Csnk2b; casein kinase 2 beta [KO:K03115]
103735565  Csnk2a2; casein kinase 2 alpha 2 [KO:K03097] [EC:2.7.11.1]
103751629  Csnk2a1; casein kinase 2 alpha 1 [KO:K03097] [EC:2.7.11.1]
103741585  Nol6; nucleolar protein 6 [KO:K14544]
103743447  Rrp7a; ribosomal RNA processing 7 homolog A [KO:K14545]
103744646  Wdr43; WD repeat domain 43 [KO:K14546]
103734791  Utp4; UTP4, small subunit processome component [KO:K14548]
103738452  Utp15; UTP15, small subunit processome component [KO:K14549]
103746793  Heatr1; HEAT repeat containing 1 [KO:K14550]
103736174  Wdr75; WD repeat domain 75 [KO:K14552]
103738407  Utp18; UTP18, small subunit processome component [KO:K14553]
103752282  Wdr36; WD repeat domain 36 [KO:K14554]
103752442  Tbl3; transducin beta like 3 [KO:K14555]
103733997  Wdr3; WD repeat domain 3 [KO:K14556]
103724512  Utp6; UTP6, small subunit processome component [KO:K14557]
103729349  Pwp2; PWP2 periodic tryptophan protein homolog (yeast) [KO:K14558]
103748073  Mphosph10; M-phase phosphoprotein 10 [KO:K14559]
103743534  Imp3; IMP3, U3 small nucleolar ribonucleoprotein [KO:K14560]
103744677  Imp4; IMP4 homolog, U3 small nucleolar ribonucleoprotein [KO:K14561]
103747081  Tcof1; treacle ribosome biogenesis factor 1 [KO:K14562]
103750749  Fbl; fibrillarin [KO:K14563] [EC:2.1.1.-]
103731737  rRNA/tRNA 2'-O-methyltransferase fibrillarin-like protein 1 [KO:K14563] [EC:2.1.1.-]
103751136  Nop56; NOP56 ribonucleoprotein [KO:K14564]
103736025  Nop58; NOP58 ribonucleoprotein [KO:K14565]
103743470  Snu13; SNU13 homolog, small nuclear ribonucleoprotein (U4/U6.U5) [KO:K12845]
103741287  Dkc1; dyskerin pseudouridine synthase 1 [KO:K11131] [EC:5.4.99.-]
103729918  Nhp2; NHP2 ribonucleoprotein [KO:K11129]
103742408  Gar1; GAR1 ribonucleoprotein [KO:K11128]
103740501  Nop10; NOP10 ribonucleoprotein [KO:K11130]
103747356  Fcf1; FCF1 rRNA-processing protein [KO:K14566]
103728752  Utp14a; UTP14A small subunit processome component [KO:K14567]
103736220  Drosha; drosha ribonuclease III [KO:K03685] [EC:3.1.26.3]
103727489  Emg1; EMG1, N1-specific pseudouridine methyltransferase [KO:K14568] [EC:2.1.1.260]
103733807  Bms1; BMS1, ribosome biogenesis factor [KO:K14569]
103749492  Nat10; N-acetyltransferase 10 [KO:K14521] [EC:2.3.1.-]
103740980  Rcl1; RNA terminal phosphate cyclase like 1 [KO:K11108]
103732821  Pop1; POP1 homolog, ribonuclease P/MRP subunit [KO:K01164] [EC:3.1.26.5]
103735181  Rpp38; ribonuclease P/MRP subunit p38 [KO:K14523] [EC:3.1.26.5]
103740874  Pop4; POP4 homolog, ribonuclease P/MRP subunit [KO:K03538] [EC:3.1.26.5]
103740075  Pop5; POP5 homolog, ribonuclease P/MRP subunit [KO:K03537] [EC:3.1.26.5]
103736884  Rpp25; ribonuclease P/MRP subunit p25 [KO:K14525] [EC:3.1.26.5]
103741567  Rpp25l; ribonuclease P/MRP subunit p25 like [KO:K14525] [EC:3.1.26.5]
103733507  Pop7; POP7 homolog, ribonuclease P/MRP subunit [KO:K14527] [EC:3.1.26.5]
103747257  Rpp30; ribonuclease P/MRP subunit p30 [KO:K03539] [EC:3.1.26.5]
103732921  Rpp40; ribonuclease P/MRP subunit p40 [KO:K14530] [EC:3.1.26.5]
103737312  Rexo1; RNA exonuclease 1 homolog [KO:K14570] [EC:3.1.-.-]
103742757  putative RNA exonuclease NEF-sp [KO:K14570] [EC:3.1.-.-]
103745212  putative exonuclease GOR [KO:K14570] [EC:3.1.-.-]
103729029  Rexo2; RNA exonuclease 2 [KO:K13288] [EC:3.1.-.-]
103752522  Xrn1; 5'-3' exoribonuclease 1 [KO:K12618] [EC:3.1.13.-]
103740603  Xrn2; 5'-3' exoribonuclease 2 [KO:K12619] [EC:3.1.13.-]
103740666  Gtpbp4; GTP binding protein 4 [KO:K06943]
103747690  Gnl2; G protein nucleolar 2 [KO:K14537]
103738661  Gnl3l; G protein nucleolar 3 like [KO:K14538]
103749010  Gnl3; G protein nucleolar 3 [KO:K14538]
103726251  Nvl; nuclear VCP-like [KO:K14571]
103751152  Mdn1; midasin AAA ATPase 1 [KO:K14572]
103744566  Rbm28; RNA binding motif protein 28 [KO:K14573]
103734683  Nob1; NIN1/PSMD8 binding protein 1 homolog [KO:K11883]
103750614  Ran; RAN, member RAS oncogene family [KO:K07936]
103743249  Xpo1; exportin 1 [KO:K14290]
103739746  Nmd3; NMD3 ribosome export adaptor [KO:K07562]
103737663  Nxf1; nuclear RNA export factor 1 [KO:K14284]
103733667  Nxf3; nuclear RNA export factor 3 [KO:K14284]
103746221  nuclear RNA export factor 2-like [KO:K14284]
103724746  nuclear RNA export factor 2-like [KO:K14284]
103724751  nuclear RNA export factor 2-like [KO:K14284]
103737360  Nxt1; nuclear transport factor 2 like export factor 1 [KO:K14285]
103750025  Nxt2; nuclear transport factor 2 like export factor 2 [KO:K14285]
103740183  Eif6; eukaryotic translation initiation factor 6 [KO:K03264]
103738939  Sbds; SBDS ribosome assembly guanine nucleotide exchange factor [KO:K14574]
103743217  Efl1; elongation factor like GTPase 1 [KO:K14536] [EC:3.6.5.-]
103738862  Lsg1; large 60S subunit nuclear export GTPase 1 [KO:K14539] [EC:3.6.1.-]
103746945  Spata5; spermatogenesis associated 5 [KO:K14575]
103738724  Ak6; adenylate kinase 6 [KO:K18532] [EC:2.7.4.3]
103732909  Riok1; RIO kinase 1 [KO:K07178] [EC:2.7.11.1]
103732020  Riok2; RIO kinase 2 [KO:K07179] [EC:2.7.11.1]
Reference
  Authors
Freed EF, Bleichert F, Dutca LM, Baserga SJ
  Title
When ribosomes go bad: diseases of ribosome biogenesis.
  Journal
Mol Biosyst 6:481-93 (2010)
DOI:10.1039/b919670f
Reference
  Authors
Perez-Fernandez J, Roman A, De Las Rivas J, Bustelo XR, Dosil M
  Title
The 90S preribosome is a multimodular structure that is assembled through a hierarchical mechanism.
  Journal
Mol Cell Biol 27:5414-29 (2007)
DOI:10.1128/MCB.00380-07
Reference
  Authors
Strunk BS, Karbstein K
  Title
Powering through ribosome assembly.
  Journal
RNA 15:2083-104 (2009)
DOI:10.1261/rna.1792109
Reference
  Authors
Granneman S, Baserga SJ
  Title
Ribosome biogenesis: of knobs and RNA processing.
  Journal
Exp Cell Res 296:43-50 (2004)
DOI:10.1016/j.yexcr.2004.03.016
Reference
  Authors
Kressler D, Hurt E, Bassler J
  Title
Driving ribosome assembly.
  Journal
Biochim Biophys Acta 1803:673-83 (2010)
DOI:10.1016/j.bbamcr.2009.10.009
Related
pathway
ngi03010  Ribosome
KO pathway
ko03008   
LinkDB

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