KEGG   PATHWAY: nin00020
Entry
nin00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Nitrosopumilus adriaticus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
nin00020  Citrate cycle (TCA cycle)
nin00020

Module
nin_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:nin00020]
nin_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:nin00020]
Other DBs
GO: 0006099
Organism
Nitrosopumilus adriaticus [GN:nin]
Gene
NADRNF5_0840  gltA; Citrate synthase [KO:K01647] [EC:2.3.3.1]
NADRNF5_0415  aco; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
NADRNF5_0502  icd; putative isocitrate/isopropylmalate dehydrogenase [KO:K00030] [EC:1.1.1.41]
NADRNF5_1762  2:oxoacid-ferredoxin oxidoreductase, fused alpha and gamma subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
NADRNF5_1761  2:oxoacid-ferredoxin oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
NADRNF5_0764  sucD; succinyl-CoA ligase (ADP-forming) alpha subunit [KO:K01902] [EC:6.2.1.5]
NADRNF5_0765  sucC; succinyl-CoA ligase (ADP-forming) beta subunit [KO:K01903] [EC:6.2.1.5]
NADRNF5_1992  sdhA; succinate dehydrogenase flavoprotein subunit/fumarate reductase [KO:K00239] [EC:1.3.5.1]
NADRNF5_1989  sdhB; FeS-center protein of succinate dehydrogenase/fumarate reductase [KO:K00240] [EC:1.3.5.1]
NADRNF5_1991  sdhC; putative succinate dehydrogenase/fumarate reductase [KO:K00241]
NADRNF5_1990  sdhD; putative succinate dehydrogenase/fumarate reductase [KO:K00242]
NADRNF5_1914  mdh; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
NADRNF5_1476  Lactate/malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
NADRNF5_1787  pckA; Phosphoenolpyruvate carboxykinase [ATP] 1 [KO:K01610] [EC:4.1.1.49]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
nin00010  Glycolysis / Gluconeogenesis
nin00061  Fatty acid biosynthesis
nin00071  Fatty acid degradation
nin00190  Oxidative phosphorylation
nin00220  Arginine biosynthesis
nin00250  Alanine, aspartate and glutamate metabolism
nin00280  Valine, leucine and isoleucine degradation
nin00350  Tyrosine metabolism
nin00470  D-Amino acid metabolism
nin00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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