KEGG   PATHWAY: niu00020
Entry
niu00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Candidatus Nitrosotenuis sp. DW1
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
niu00020  Citrate cycle (TCA cycle)
niu00020

Module
niu_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:niu00020]
Other DBs
GO: 0006099
Organism
Candidatus Nitrosotenuis sp. DW1 [GN:niu]
Gene
DSQ19_06340  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
DSQ19_08330  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
DSQ19_07765  isocitrate/isopropylmalate dehydrogenase family protein [KO:K00030] [EC:1.1.1.41]
DSQ19_02165  2-oxoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
DSQ19_02170  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
DSQ19_06565  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
DSQ19_06560  succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
DSQ19_08865  succinate dehydrogenase/fumarate reductase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
DSQ19_08850  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
DSQ19_08860  succinate dehydrogenase [KO:K00241]
DSQ19_08855  succinate dehydrogenase [KO:K00242]
DSQ19_01005  lactate dehydrogenase [KO:K00024] [EC:1.1.1.37]
DSQ19_01860  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
niu00010  Glycolysis / Gluconeogenesis
niu00053  Ascorbate and aldarate metabolism
niu00061  Fatty acid biosynthesis
niu00071  Fatty acid degradation
niu00190  Oxidative phosphorylation
niu00220  Arginine biosynthesis
niu00250  Alanine, aspartate and glutamate metabolism
niu00280  Valine, leucine and isoleucine degradation
niu00350  Tyrosine metabolism
niu00470  D-Amino acid metabolism
niu00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system