KEGG   PATHWAY: niv00630
Entry
niv00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Niveibacterium microcysteis
Class
Metabolism; Carbohydrate metabolism
Pathway map
niv00630  Glyoxylate and dicarboxylate metabolism
niv00630

Module
niv_M00012  Glyoxylate cycle [PATH:niv00630]
niv_M00621  Glycine cleavage system [PATH:niv00630]
Other DBs
GO: 0046487 0043648
Organism
Niveibacterium microcysteis [GN:niv]
Gene
JY500_15155  aceA; isocitrate lyase [KO:K01637] [EC:4.1.3.1]
JY500_07530  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
JY500_14200  malate synthase A [KO:K01638] [EC:2.3.3.9]
JY500_10135  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
JY500_10170  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
JY500_10125  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
JY500_01315  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
JY500_09470  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
JY500_13815  acetyl-CoA C-acyltransferase family protein [KO:K00626] [EC:2.3.1.9]
JY500_16000  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
JY500_16970  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
JY500_13290  beta-ketoacyl-ACP reductase [KO:K00023] [EC:1.1.1.36]
JY500_13295  phbB; acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
JY500_00360  MaoC family dehydratase [KO:K17865] [EC:4.2.1.55]
JY500_03210  accC; acetyl-CoA carboxylase biotin carboxylase subunit [KO:K01965] [EC:6.4.1.3]
JY500_03205  acyl-CoA carboxylase subunit beta [KO:K01966] [EC:6.4.1.3 2.1.3.15]
JY500_03195  scpA; methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
JY500_09540  FAD-binding protein [KO:K00104] [EC:1.1.99.14]
JY500_09545  glcE; glycolate oxidase subunit GlcE [KO:K11472] [EC:1.1.99.14]
JY500_09550  glcF; glycolate oxidase subunit GlcF [KO:K11473] [EC:1.1.99.14]
JY500_01400  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
JY500_16200  D-2-hydroxyacid dehydrogenase [KO:K00018] [EC:1.1.1.29]
JY500_10270  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
JY500_14985  HAD-IA family hydrolase [KO:K01091] [EC:3.1.3.18]
JY500_16640  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
JY500_21810  alanine--glyoxylate aminotransferase family protein [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
JY500_05080  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
JY500_09805  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
JY500_13475  glnT; type III glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
JY500_13530  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
JY500_17770  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
JY500_06645  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
JY500_04220  gcvP; aminomethyl-transferring glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
JY500_04230  gcvT; glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
JY500_03660  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
JY500_10190  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
JY500_04225  gcvH; glycine cleavage system protein GcvH [KO:K02437]
JY500_16310  NAD(P)-dependent oxidoreductase [KO:K00042] [EC:1.1.1.60]
JY500_15840  glycerate kinase [KO:K11529] [EC:2.7.1.165]
JY500_09385  eda; bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
JY500_05595  kynB; arylformamidase [KO:K07130] [EC:3.5.1.9]
JY500_02105  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
JY500_10775  acetamidase/formamidase family protein [KO:K01455] [EC:3.5.1.49]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
niv00010  Glycolysis / Gluconeogenesis
niv00020  Citrate cycle (TCA cycle)
niv00030  Pentose phosphate pathway
niv00053  Ascorbate and aldarate metabolism
niv00071  Fatty acid degradation
niv00230  Purine metabolism
niv00250  Alanine, aspartate and glutamate metabolism
niv00260  Glycine, serine and threonine metabolism
niv00620  Pyruvate metabolism
niv00710  Carbon fixation by Calvin cycle
niv00750  Vitamin B6 metabolism
niv00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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