KEGG   PATHWAY: nli00020
Entry
nli00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Candidatus Nitronauta litoralis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
nli00020  Citrate cycle (TCA cycle)
nli00020

Module
nli_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:nli00020]
nli_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:nli00020]
nli_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:nli00020]
Other DBs
GO: 0006099
Organism
Candidatus Nitronauta litoralis [GN:nli]
Gene
G3M70_15125  citrate synthase [KO:K01647] [EC:2.3.3.1]
G3M70_16640  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
G3M70_17595  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
G3M70_15785  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
G3M70_16790  NAD(P)/FAD-dependent oxidoreductase [KO:K00382] [EC:1.8.1.4]
G3M70_13190  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
G3M70_13195  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
G3M70_01180  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
G3M70_12785  FAD-binding protein [KO:K00239] [EC:1.3.5.1]
G3M70_01175  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
G3M70_12790  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
G3M70_01185  succinate dehydrogenase [KO:K00241]
G3M70_12795  heterodisulfide reductase [KO:K00241]
G3M70_05670  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
G3M70_05835  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
G3M70_08860  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
G3M70_06755  pyruvate synthase [KO:K00169] [EC:1.2.7.1]
G3M70_07775  ferredoxin oxidoreductase [KO:K00169] [EC:1.2.7.1]
G3M70_13170  ferredoxin oxidoreductase [KO:K00169] [EC:1.2.7.1]
G3M70_06750  pyruvate synthase [KO:K00170] [EC:1.2.7.1]
G3M70_07780  ferredoxin oxidoreductase [KO:K00170] [EC:1.2.7.1]
G3M70_13165  ferredoxin oxidoreductase [KO:K00170] [EC:1.2.7.1]
G3M70_06760  4Fe-4S dicluster domain-containing protein [KO:K00172] [EC:1.2.7.1]
G3M70_07785  ferredoxin oxidoreductase [KO:K00172] [EC:1.2.7.1]
G3M70_13160  ferredoxin oxidoreductase [KO:K00172] [EC:1.2.7.1]
G3M70_07790  pyruvate ferredoxin oxidoreductase [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
nli00010  Glycolysis / Gluconeogenesis
nli00053  Ascorbate and aldarate metabolism
nli00061  Fatty acid biosynthesis
nli00071  Fatty acid degradation
nli00190  Oxidative phosphorylation
nli00220  Arginine biosynthesis
nli00250  Alanine, aspartate and glutamate metabolism
nli00280  Valine, leucine and isoleucine degradation
nli00350  Tyrosine metabolism
nli00470  D-Amino acid metabolism
nli00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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