KEGG   PATHWAY: nmr00020
Entry
nmr00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Nitrosopumilus maritimus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
nmr00020  Citrate cycle (TCA cycle)
nmr00020

Module
nmr_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:nmr00020]
nmr_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:nmr00020]
Other DBs
GO: 0006099
Organism
Nitrosopumilus maritimus [GN:nmr]
Gene
Nmar_1099  2-methylcitrate synthase/citrate synthase II [KO:K01647] [EC:2.3.3.1]
Nmar_1482  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
Nmar_1379  Isocitrate dehydrogenase (NAD(+)) [KO:K00030] [EC:1.1.1.41]
Nmar_0413  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Nmar_0414  pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Nmar_1124  CoA-binding domain protein [KO:K01902] [EC:6.2.1.5]
Nmar_1123  Succinate--CoA ligase (ADP-forming) [KO:K01903] [EC:6.2.1.5]
Nmar_0258  succinate dehydrogenase or fumarate reductase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
Nmar_0261  succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
Nmar_0259  conserved hypothetical protein [KO:K00241]
Nmar_0260  conserved hypothetical protein [KO:K00242]
Nmar_0676  Lactate/malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
Nmar_0338  Lactate/malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
Nmar_0392  Phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
nmr00010  Glycolysis / Gluconeogenesis
nmr00061  Fatty acid biosynthesis
nmr00071  Fatty acid degradation
nmr00190  Oxidative phosphorylation
nmr00220  Arginine biosynthesis
nmr00250  Alanine, aspartate and glutamate metabolism
nmr00280  Valine, leucine and isoleucine degradation
nmr00350  Tyrosine metabolism
nmr00470  D-Amino acid metabolism
nmr00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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