KEGG   PATHWAY: nsa00020
Entry
nsa00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Nitratifractor salsuginis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
nsa00020  Citrate cycle (TCA cycle)
nsa00020

Module
nsa_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:nsa00020]
nsa_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:nsa00020]
nsa_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:nsa00020]
nsa_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:nsa00020]
nsa_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:nsa00020]
Other DBs
GO: 0006099
Organism
Nitratifractor salsuginis [GN:nsa]
Gene
Nitsa_1267  citrate synthase [KO:K01647] [EC:2.3.3.1]
Nitsa_0577  ATP-citrate lyase/succinyl-CoA ligase [KO:K15230] [EC:2.3.3.8]
Nitsa_0576  ATP citrate lyase subunit 1 [KO:K15231] [EC:2.3.3.8]
Nitsa_0783  aconitase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
Nitsa_0355  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
Nitsa_1000  FAD-dependent pyridine nucleotide-disulfide oxidoreductase [KO:K00382] [EC:1.8.1.4]
Nitsa_0371  2-oxoglutarate ferredoxin oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Nitsa_0372  2-oxoglutarate ferredoxin oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Nitsa_0373  2-oxoglutarate ferredoxin oxidoreductase, gamma subunit [KO:K00177] [EC:1.2.7.3]
Nitsa_0370  2-oxoglutarate-acceptor oxidoreductase subunit OorD [KO:K00176] [EC:1.2.7.3]
Nitsa_0360  succinyl-CoA synthetase (ADP-forming) alpha subunit [KO:K01902] [EC:6.2.1.5]
Nitsa_0359  succinyl-CoA synthetase (ADP-forming) beta subunit [KO:K01903] [EC:6.2.1.5]
Nitsa_1072  succinate dehydrogenase subunit A [KO:K00239] [EC:1.3.5.1]
Nitsa_0239  Succinate dehydrogenase (ubiquinone) [KO:K00239] [EC:1.3.5.1]
Nitsa_1071  succinate dehydrogenase subunit B [KO:K00240] [EC:1.3.5.1]
Nitsa_1070  succinate dehydrogenase subunit C [KO:K00241]
Nitsa_1313  succinate dehydrogenase subunit A [KO:K00233] [EC:1.3.5.1 7.1.1.12]
Nitsa_1312  succinate dehydrogenase subunit B [KO:K25995] [EC:1.3.5.1 7.1.1.12]
Nitsa_1314  fumarate reductase respiratory complex [KO:K25996]
Nitsa_0357  fumarase alpha subunit [KO:K01677] [EC:4.2.1.2]
Nitsa_0358  hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit [KO:K01678] [EC:4.2.1.2]
Nitsa_0356  malate dehydrogenase (NAD) [KO:K00024] [EC:1.1.1.37]
Nitsa_1256  biotin/lipoyl attachment domain-containing protein [KO:K01960] [EC:6.4.1.1]
Nitsa_1254  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
Nitsa_0996  Pyruvate dehydrogenase (acetyl-transferring) [KO:K00161] [EC:1.2.4.1]
Nitsa_0997  Transketolase central region [KO:K00162] [EC:1.2.4.1]
Nitsa_0998  biotin/lipoyl attachment domain-containing protein [KO:K00627] [EC:2.3.1.12]
Nitsa_1748  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00169] [EC:1.2.7.1]
Nitsa_1747  thiamine pyrophosphate TPP-binding domain-containing protein [KO:K00170] [EC:1.2.7.1]
Nitsa_1750  pyruvate/ketoisovalerate oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
Nitsa_1749  pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
nsa00010  Glycolysis / Gluconeogenesis
nsa00061  Fatty acid biosynthesis
nsa00071  Fatty acid degradation
nsa00190  Oxidative phosphorylation
nsa00220  Arginine biosynthesis
nsa00250  Alanine, aspartate and glutamate metabolism
nsa00280  Valine, leucine and isoleucine degradation
nsa00350  Tyrosine metabolism
nsa00470  D-Amino acid metabolism
nsa00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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