KEGG   PATHWAY: nsy00630
Entry
nsy00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Nicotiana sylvestris (wood tobacco)
Class
Metabolism; Carbohydrate metabolism
Pathway map
nsy00630  Glyoxylate and dicarboxylate metabolism
nsy00630

Module
nsy_M00012  Glyoxylate cycle [PATH:nsy00630]
nsy_M00532  Photorespiration [PATH:nsy00630]
nsy_M00621  Glycine cleavage system [PATH:nsy00630]
Other DBs
GO: 0046487 0043648
Organism
Nicotiana sylvestris (wood tobacco) [GN:nsy]
Gene
104216785  isocitrate lyase-like [KO:K01637] [EC:4.1.3.1 4.1.3.30]
104237910  isocitrate lyase [KO:K01637] [EC:4.1.3.1 4.1.3.30]
104212678  acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal-like [KO:K01895] [EC:6.2.1.1]
104216940  acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal-like [KO:K01895] [EC:6.2.1.1]
104247783  acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal isoform X1 [KO:K01895] [EC:6.2.1.1]
104247004  acetate/butyrate--CoA ligase AAE7, peroxisomal-like [KO:K01913] [EC:6.2.1.1 6.2.1.2]
104238582  acetate/butyrate--CoA ligase AAE7, peroxisomal-like [KO:K01913] [EC:6.2.1.1 6.2.1.2]
104226359  malate synthase, glyoxysomal [KO:K01638] [EC:2.3.3.9]
104231246  malate dehydrogenase, cytoplasmic-like isoform X1 [KO:K00025] [EC:1.1.1.37]
104220782  malate dehydrogenase-like [KO:K00025] [EC:1.1.1.37]
104219296  malate dehydrogenase [KO:K00025] [EC:1.1.1.37]
104228472  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
104249082  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
104238088  malate dehydrogenase, glyoxysomal-like [KO:K00026] [EC:1.1.1.37]
104227965  malate dehydrogenase, chloroplastic isoform X1 [KO:K00026] [EC:1.1.1.37]
104212592  malate dehydrogenase 2, mitochondrial [KO:K00026] [EC:1.1.1.37]
104228294  citrate synthase, glyoxysomal-like [KO:K01647] [EC:2.3.3.1]
104240548  citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
104219955  aconitate hydratase, cytoplasmic-like [KO:K01681] [EC:4.2.1.3]
104235290  aconitate hydratase, cytoplasmic-like isoform X1 [KO:K01681] [EC:4.2.1.3]
104221546  aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
104212058  acetyl-CoA acetyltransferase, cytosolic 1-like [KO:K00626] [EC:2.3.1.9]
104214082  acetyl-CoA acetyltransferase, cytosolic 1 isoform X1 [KO:K00626] [EC:2.3.1.9]
104235602  acetyl-CoA acetyltransferase, cytosolic 1-like [KO:K00626] [EC:2.3.1.9]
104249669  peroxisomal (S)-2-hydroxy-acid oxidase GLO4-like [KO:K11517] [EC:1.1.3.15]
104249671  peroxisomal (S)-2-hydroxy-acid oxidase GLO4-like isoform X1 [KO:K11517] [EC:1.1.3.15]
104232443  peroxisomal (S)-2-hydroxy-acid oxidase [KO:K11517] [EC:1.1.3.15]
104245167  peroxisomal (S)-2-hydroxy-acid oxidase-like [KO:K11517] [EC:1.1.3.15]
104238841  peroxisomal (S)-2-hydroxy-acid oxidase-like isoform X1 [KO:K11517] [EC:1.1.3.15]
104223749  catalase isozyme 3-like [KO:K03781] [EC:1.11.1.6]
104241039  catalase isozyme 1 [KO:K03781] [EC:1.11.1.6]
104241240  catalase isozyme 3 [KO:K03781] [EC:1.11.1.6]
104239443  catalase isozyme 1 [KO:K03781] [EC:1.11.1.6]
104225942  glyoxylate/hydroxypyruvate reductase HPR3-like [KO:K15919] [EC:1.1.1.79 1.1.1.81]
104229908  glyoxylate/hydroxypyruvate reductase HPR3-like [KO:K15919] [EC:1.1.1.79 1.1.1.81]
104229909  glyoxylate/hydroxypyruvate reductase HPR3-like [KO:K15919] [EC:1.1.1.79 1.1.1.81]
104239530  glyoxylate/succinic semialdehyde reductase 2, chloroplastic isoform X1 [KO:K18121] [EC:1.1.1.79 1.1.1.-]
104217511  glyoxylate/succinic semialdehyde reductase 1 [KO:K18121] [EC:1.1.1.79 1.1.1.-]
104231464  glycerate dehydrogenase [KO:K15893] [EC:1.1.1.29]
104216150  phosphoglycolate phosphatase 1B, chloroplastic-like [KO:K19269] [EC:3.1.3.18 3.1.3.48]
104230902  phosphoglycolate phosphatase 2 [KO:K19269] [EC:3.1.3.18 3.1.3.48]
3735077  rbcL; ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [KO:K01601] [EC:4.1.1.39]
104210868  ribulose bisphosphate carboxylase small chain S41, chloroplastic [KO:K01602] [EC:4.1.1.39]
104240838  ribulose bisphosphate carboxylase small chain clone 512-like [KO:K01602] [EC:4.1.1.39]
104224205  ribulose bisphosphate carboxylase small chain S41, chloroplastic-like [KO:K01602] [EC:4.1.1.39]
104241798  ribulose bisphosphate carboxylase small chain, chloroplastic [KO:K01602] [EC:4.1.1.39]
104241799  ribulose bisphosphate carboxylase small chain, chloroplastic [KO:K01602] [EC:4.1.1.39]
104246648  ribulose bisphosphate carboxylase small chain S41, chloroplastic-like [KO:K01602] [EC:4.1.1.39]
104218335  ribulose bisphosphate carboxylase small chain S41, chloroplastic-like [KO:K01602] [EC:4.1.1.39]
104222872  ribulose bisphosphate carboxylase small chain, chloroplastic [KO:K01602] [EC:4.1.1.39]
104241246  ribulose bisphosphate carboxylase small chain, chloroplastic-like [KO:K01602] [EC:4.1.1.39]
104225772  serine--glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
104212315  glutamate--glyoxylate aminotransferase 2-like [KO:K14272] [EC:2.6.1.4 2.6.1.2 2.6.1.44]
104216677  glutamate--glyoxylate aminotransferase 2 [KO:K14272] [EC:2.6.1.4 2.6.1.2 2.6.1.44]
104241431  ferredoxin-dependent glutamate synthase, chloroplastic [KO:K00284] [EC:1.4.7.1]
104246795  glutamine synthetase-like [KO:K01915] [EC:6.3.1.2]
104234161  glutamine synthetase isoform X1 [KO:K01915] [EC:6.3.1.2]
104223804  glutamine synthetase, chloroplastic [KO:K01915] [EC:6.3.1.2]
104222867  glutamine synthetase cytosolic isozyme 1-1 [KO:K01915] [EC:6.3.1.2]
104235112  serine hydroxymethyltransferase 4-like [KO:K00600] [EC:2.1.2.1]
104237522  serine hydroxymethyltransferase 6-like [KO:K00600] [EC:2.1.2.1]
104229323  serine hydroxymethyltransferase 3, chloroplastic-like [KO:K00600] [EC:2.1.2.1]
104217431  serine hydroxymethyltransferase, mitochondrial-like [KO:K00600] [EC:2.1.2.1]
104245485  serine hydroxymethyltransferase 3, chloroplastic-like [KO:K00600] [EC:2.1.2.1]
104226107  serine hydroxymethyltransferase, mitochondrial-like [KO:K00600] [EC:2.1.2.1]
104217513  serine hydroxymethyltransferase 4 [KO:K00600] [EC:2.1.2.1]
104246713  serine hydroxymethyltransferase, mitochondrial [KO:K00600] [EC:2.1.2.1]
104242372  serine hydroxymethyltransferase 7-like [KO:K00600] [EC:2.1.2.1]
104243601  glycine dehydrogenase (decarboxylating), mitochondrial [KO:K00281] [EC:1.4.4.2]
104231511  aminomethyltransferase, mitochondrial [KO:K00605] [EC:2.1.2.10]
104246152  dihydrolipoyl dehydrogenase 2, chloroplastic-like [KO:K00382] [EC:1.8.1.4]
104240233  dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
104223186  dihydrolipoyl dehydrogenase 2, chloroplastic-like [KO:K00382] [EC:1.8.1.4]
104225038  dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
104214154  dihydrolipoyl dehydrogenase 2, chloroplastic-like isoform X1 [KO:K00382] [EC:1.8.1.4]
104213585  glycine cleavage system H protein 2, mitochondrial-like [KO:K02437]
104248742  glycine cleavage system H protein, mitochondrial-like isoform X1 [KO:K02437]
104223464  glycine cleavage system H protein 2, mitochondrial-like [KO:K02437]
104214851  glycine cleavage system H protein, mitochondrial [KO:K02437]
104239031  D-glycerate 3-kinase, chloroplastic [KO:K15918] [EC:2.7.1.31]
104237658  formate dehydrogenase, mitochondrial [KO:K00122] [EC:1.17.1.9]
104211082  formyltetrahydrofolate deformylase 1, mitochondrial-like isoform X1 [KO:K01433] [EC:3.5.1.10]
104213342  formyltetrahydrofolate deformylase 1, mitochondrial [KO:K01433] [EC:3.5.1.10]
104246998  putative formamidase C869.04 isoform X1 [KO:K01455] [EC:3.5.1.49]
104218827  LOW QUALITY PROTEIN: 4-coumarate--CoA ligase-like 10 [KO:K22133] [EC:6.2.1.8]
104248506  4-coumarate--CoA ligase-like 10 [KO:K22133] [EC:6.2.1.8]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
nsy00010  Glycolysis / Gluconeogenesis
nsy00020  Citrate cycle (TCA cycle)
nsy00030  Pentose phosphate pathway
nsy00053  Ascorbate and aldarate metabolism
nsy00071  Fatty acid degradation
nsy00230  Purine metabolism
nsy00250  Alanine, aspartate and glutamate metabolism
nsy00260  Glycine, serine and threonine metabolism
nsy00620  Pyruvate metabolism
nsy00710  Carbon fixation by Calvin cycle
nsy00750  Vitamin B6 metabolism
nsy00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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