KEGG   PATHWAY: nti00020
Entry
nti00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Nitrospira tepida
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
nti00020  Citrate cycle (TCA cycle)
nti00020

Module
nti_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:nti00020]
nti_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:nti00020]
Other DBs
GO: 0006099
Organism
Nitrospira tepida [GN:nti]
Gene
DNFV4_02487  Citrate synthase [KO:K01647] [EC:2.3.3.1]
DNFV4_00068  Citrate synthase [KO:K01647] [EC:2.3.3.1]
DNFV4_00333  2-methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
DNFV4_01112  ATP citrate lyase, alpha subunit [KO:K15230] [EC:2.3.3.8]
DNFV4_01110  ATP-citrate lyase, beta subunit [KO:K15231] [EC:2.3.3.8]
DNFV4_01113  Aconitate hydratase A [KO:K01681] [EC:4.2.1.3]
DNFV4_01114  Isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
DNFV4_00265  Isocitrate dehydrogenase (NAD) [KO:K00030] [EC:1.1.1.41]
DNFV4_02719  Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
DNFV4_04269  lipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
DNFV4_01119  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
DNFV4_01117  succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
DNFV4_00491  Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
DNFV4_02864  Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit [KO:K00240] [EC:1.3.5.1]
DNFV4_02773  Succinate dehydrogenase, subunit C [KO:K00241]
DNFV4_02489  fumarase C [KO:K01679] [EC:4.2.1.2]
DNFV4_03680  Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
DNFV4_01521  Pyruvate carboxylase, subunit A [KO:K01959] [EC:6.4.1.1]
DNFV4_01520  Pyruvate carboxylase subunit B [KO:K01960] [EC:6.4.1.1]
DNFV4_04268  Pyruvate dehydrogenase E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
DNFV4_04313  Pyruvate dehydrogenase E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
DNFV4_04267  Pyruvate dehydrogenase E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
DNFV4_04314  Pyruvate dehydrogenase E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
DNFV4_04266  Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
DNFV4_04316  Dihydrolipoamide acetyltransferase component (E2) of acetoin dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
DNFV4_01103  2-oxoglutarate:ferredoxin oxidoreductase alpha subunit [KO:K00169] [EC:1.2.7.1]
DNFV4_01265  Pyruvate:ferredoxin oxidoreductase, alpha subunit [KO:K00169] [EC:1.2.7.1]
DNFV4_01099  2-oxoglutarate:ferredoxin oxidoreductase beta subunit [KO:K00170] [EC:1.2.7.1]
DNFV4_01264  Pyruvate:ferredoxin oxidoreductase beta subunit [KO:K00170] [EC:1.2.7.1]
DNFV4_01100  2-oxoglutarate:ferredoxin oxidoreductase gamma subunit [KO:K00172] [EC:1.2.7.1]
DNFV4_01263  Pyruvate:ferredoxin oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
DNFV4_01262  Pyruvate:ferredoxin oxidoreductase epsilon subunit [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
nti00010  Glycolysis / Gluconeogenesis
nti00053  Ascorbate and aldarate metabolism
nti00061  Fatty acid biosynthesis
nti00071  Fatty acid degradation
nti00190  Oxidative phosphorylation
nti00220  Arginine biosynthesis
nti00250  Alanine, aspartate and glutamate metabolism
nti00280  Valine, leucine and isoleucine degradation
nti00350  Tyrosine metabolism
nti00470  D-Amino acid metabolism
nti00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system