KEGG   PATHWAY: ntm00020
Entry
ntm00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Neobacillus thermocopriae
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ntm00020  Citrate cycle (TCA cycle)
ntm00020

Module
ntm_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ntm00020]
ntm_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ntm00020]
ntm_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ntm00020]
ntm_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ntm00020]
ntm_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ntm00020]
Other DBs
GO: 0006099
Organism
Neobacillus thermocopriae [GN:ntm]
Gene
BTDUT50_13135  citrate synthase [KO:K01647] [EC:2.3.3.1]
BTDUT50_08555  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
BTDUT50_13130  isocitrate dehydrogenase (NADP(+)) [KO:K00031] [EC:1.1.1.42]
BTDUT50_06575  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BTDUT50_11200  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BTDUT50_08385  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
BTDUT50_08390  2-oxoacid ferredoxin oxidoreductase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
BTDUT50_07290  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
BTDUT50_07285  ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
BTDUT50_12785  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
BTDUT50_12780  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
BTDUT50_12790  succinate dehydrogenase [KO:K00241]
BTDUT50_14920  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
BTDUT50_13125  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BTDUT50_07745  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
BTDUT50_06685  pyc; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
BTDUT50_13630  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
BTDUT50_06560  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
BTDUT50_06565  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
BTDUT50_06570  branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
BTDUT50_09460  pyruvate synthase [KO:K00169] [EC:1.2.7.1]
BTDUT50_14615  pyruvate synthase [KO:K00169] [EC:1.2.7.1]
BTDUT50_09465  ferredoxin [KO:K00172] [EC:1.2.7.1]
BTDUT50_14620  ferredoxin [KO:K00172] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ntm00010  Glycolysis / Gluconeogenesis
ntm00053  Ascorbate and aldarate metabolism
ntm00061  Fatty acid biosynthesis
ntm00071  Fatty acid degradation
ntm00190  Oxidative phosphorylation
ntm00220  Arginine biosynthesis
ntm00250  Alanine, aspartate and glutamate metabolism
ntm00280  Valine, leucine and isoleucine degradation
ntm00350  Tyrosine metabolism
ntm00470  D-Amino acid metabolism
ntm00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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