KEGG   PATHWAY: obb03410
Entry
obb03410                    Pathway                                
Name
Base excision repair - Osmia bicornis bicornis (red mason bee)
Description
Base excision repair (BER) is the predominant DNA damage repair pathway for the processing of small base lesions, derived from oxidation and alkylation damages. BER is normally defined as DNA repair initiated by lesion-specific DNA glycosylases and completed by either of the two sub-pathways: short-patch BER where only one nucleotide is replaced and long-patch BER where 2-13 nucleotides are replaced. Each sub-pathway of BER relies on the formation of protein complexes that assemble at the site of the DNA lesion and facilitate repair in a coordinated fashion. This process of complex formation appears to provide an increase in specificity and efficiency to the BER pathway, thereby facilitating the maintenance of genome integrity by preventing the accumulation of highly toxic repair intermediates.
Class
Genetic Information Processing; Replication and repair
Pathway map
obb03410  Base excision repair
obb03410

Other DBs
GO: 0006284 0006285 0006286 0006287 0006288
Organism
Osmia bicornis bicornis (red mason bee) [GN:obb]
Gene
114872883  N-glycosylase/DNA lyase [KO:K03660] [EC:3.2.2.- 4.2.99.18]
114880327  endonuclease III-like protein 1 [KO:K10773] [EC:3.2.2.- 4.2.99.18]
114875725  single-strand selective monofunctional uracil DNA glycosylase [KO:K10800] [EC:3.2.2.-]
114873830  uncharacterized protein LOC114873830 [KO:K03652] [EC:3.2.2.21]
114872787  G/T mismatch-specific thymine DNA glycosylase-like [KO:K20813] [EC:3.2.2.29]
114876182  probable serine/threonine-protein kinase yakA [KO:K20813] [EC:3.2.2.29]
114874589  uncharacterized protein LOC114874589 isoform X1 [KO:K10771] [EC:3.1.11.2]
114875802  uncharacterized protein F21D5.5 [KO:K08073] [EC:3.1.3.32 2.7.1.78]
114881977  probable tyrosyl-DNA phosphodiesterase [KO:K10862] [EC:3.1.4.-]
114877142  DNA polymerase beta-like [KO:K02330] [EC:2.7.7.7 4.2.99.-]
114874086  high mobility group protein DSP1-like [KO:K10802]
114872349  poly [ADP-ribose] polymerase isoform X1 [KO:K24070] [EC:2.4.2.30]
114879702  poly(ADP-ribose) glycohydrolase-like isoform X1 [KO:K07759] [EC:3.2.1.143]
114871558  uncharacterized protein LOC114871558 isoform X1 [KO:K07759] [EC:3.2.1.143]
114871632  uncharacterized protein LOC114871632 isoform X1 [KO:K07759] [EC:3.2.1.143]
114880208  ADP-ribose glycohydrolase ARH3-like [KO:K11687] [EC:3.2.1.143]
114875389  aprataxin [KO:K10863] [EC:3.6.1.70 3.6.1.71 3.6.1.72]
114874694  DNA repair protein XRCC1 [KO:K10803]
114882231  DNA polymerase subunit gamma-1, mitochondrial [KO:K02332] [EC:2.7.7.7]
114872258  DNA polymerase subunit gamma-2, mitochondrial [KO:K02333]
114879442  DNA ligase 3 [KO:K10776] [EC:6.5.1.1]
114878408  DNA polymerase delta catalytic subunit isoform X1 [KO:K02327] [EC:2.7.7.7]
114871146  DNA polymerase delta small subunit-like isoform X1 [KO:K02328]
114878630  DNA polymerase delta small subunit-like isoform X1 [KO:K02328]
114871176  DNA polymerase delta subunit 3-like [KO:K03504]
114880355  DNA polymerase epsilon catalytic subunit A [KO:K02324] [EC:2.7.7.7]
114873006  DNA polymerase epsilon subunit 2 isoform X1 [KO:K02325] [EC:2.7.7.7]
114878666  DNA polymerase epsilon subunit 3 [KO:K02326] [EC:2.7.7.7]
114874069  DNA polymerase epsilon subunit 4 [KO:K03506] [EC:2.7.7.7]
114874903  proliferating cell nuclear antigen [KO:K04802]
114874104  replication factor C subunit 1 isoform X1 [KO:K10754]
114870867  replication factor C subunit 2 [KO:K10755]
114872404  replication factor C subunit 4 [KO:K10755]
114878827  replication factor C subunit 5 isoform X1 [KO:K10756]
114877264  replication factor C subunit 3 [KO:K10756]
114875269  flap endonuclease 1 isoform X1 [KO:K04799] [EC:3.1.-.-]
114879118  DNA ligase 1 isoform X1 [KO:K10747] [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Reference
  Authors
Krwawicz J, Arczewska KD, Speina E, Maciejewska A, Grzesiuk E.
  Title
Bacterial DNA repair genes and their eukaryotic homologues: 1. Mutations in genes involved in base excision repair (BER) and DNA-end processors and their implication in mutagenesis and human disease.
  Journal
Acta Biochim Pol 54:413-34 (2007)
Reference
  Authors
Almeida KH, Sobol RW.
  Title
A unified view of base excision repair: lesion-dependent protein complexes regulated by post-translational modification.
  Journal
DNA Repair (Amst) 6:695-711 (2007)
DOI:10.1016/j.dnarep.2007.01.009
Reference
  Authors
Moen MN, Knaevelsrud I, Haugland GT, Grosvik K, Birkeland NK, Klungland A, Bjelland S
  Title
Uracil-DNA glycosylase of Thermoplasma acidophilum directs long-patch base excision repair, which is promoted by deoxynucleoside triphosphates and ATP/ADP, into short-patch repair.
  Journal
J Bacteriol 193:4495-508 (2011)
DOI:10.1128/JB.00233-11
Reference
  Authors
Ikeda S, Seki S.
  Title
[Base excision repair: DNA glycosylase and AP endonuclease]
  Journal
Tanpakushitsu Kakusan Koso 46:916-23 (2001)
KO pathway
ko03410   
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