KEGG   PATHWAY: odi00630
Entry
odi00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Orrella dioscoreae
Class
Metabolism; Carbohydrate metabolism
Pathway map
odi00630  Glyoxylate and dicarboxylate metabolism
odi00630

Module
odi_M00012  Glyoxylate cycle [PATH:odi00630]
odi_M00621  Glycine cleavage system [PATH:odi00630]
Other DBs
GO: 0046487 0043648
Organism
Orrella dioscoreae [GN:odi]
Gene
ODI_R2788  Isocitrate lyase [KO:K01637] [EC:4.1.3.1]
ODI_R1455  Acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
ODI_R1475  Acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
ODI_R2774  Malate synthase G [KO:K01638] [EC:2.3.3.9]
ODI_R2886  Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
ODI_R4134  Citrate synthase (si) [KO:K01647] [EC:2.3.3.1]
ODI_R2879  Citrate synthase (si) [KO:K01647] [EC:2.3.3.1]
ODI_R2897  Aconitate hydratase @ 2-methylisocitrate dehydratase [KO:K01681] [EC:4.2.1.3]
ODI_R2894  Aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
ODI_R2939  3-ketoacyl-CoA thiolase @ Acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
ODI_R4146  3-ketoacyl-CoA thiolase [KO:K00626] [EC:2.3.1.9]
ODI_R2804  3-ketoacyl-CoA thiolase @ Acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
ODI_R0214  3-ketoacyl-CoA thiolase [KO:K00626] [EC:2.3.1.9]
ODI_R3354  Acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
ODI_R2857  Acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
ODI_R3780  Phosphate acetyltransferase [KO:K17865] [EC:4.2.1.55]
ODI_R3784  MaoC family protein [KO:K17865] [EC:4.2.1.55]
ODI_R3843  Urea carboxylase without Allophanate hydrolase 2 domains [KO:K11263] [EC:6.4.1.2 6.4.1.3 6.3.4.14]
ODI_R1686  Glycolate dehydrogenase, subunit GlcD [KO:K00104] [EC:1.1.99.14]
ODI_R1687  Glycolate dehydrogenase, iron-sulfur subunit GlcF [KO:K11473] [EC:1.1.99.14]
ODI_R0014  Catalase [KO:K03781] [EC:1.11.1.6]
ODI_R3363  Catalase [KO:K03781] [EC:1.11.1.6]
ODI_R0912  D-3-phosphoglycerate dehydrogenase [KO:K12972] [EC:1.1.1.79 1.1.1.81]
ODI_R0673  D-3-phosphoglycerate dehydrogenase [KO:K12972] [EC:1.1.1.79 1.1.1.81]
ODI_R3943  Hydroxypyruvate reductase [KO:K00018] [EC:1.1.1.29]
ODI_R1413  Similar to phosphoglycolate phosphatase, clustered with ribosomal large subunit pseudouridine synthase C [KO:K01091] [EC:3.1.3.18]
ODI_R4388  Phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
ODI_R4227  Phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
ODI_R0444  hydrolase, haloacid dehalogenase-like family [KO:K01091] [EC:3.1.3.18]
ODI_R0722  Serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
ODI_R3789  Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) [KO:K00281] [EC:1.4.4.2]
ODI_R3791  Aminomethyltransferase (glycine cleavage system T protein) [KO:K00605] [EC:2.1.2.10]
ODI_R2874  Dihydrolipoamide dehydrogenase of 2-oxoglutarate dehydrogenase [KO:K00382] [EC:1.8.1.4]
ODI_R2423  Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex [KO:K00382] [EC:1.8.1.4]
ODI_R2433  Dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
ODI_R3790  Glycine cleavage system H protein [KO:K02437]
ODI_R1036  Glycerate kinase [KO:K00865] [EC:2.7.1.165]
ODI_R3448  Aldehyde dehydrogenase A [KO:K07248] [EC:1.2.1.22 1.2.1.21]
ODI_R1464  Tartrate dehydrogenase @ Tartrate decarboxylase @ D-malic enzyme [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
ODI_R0409  Tartrate dehydrogenase @ Tartrate decarboxylase @ D-malic enzyme [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
ODI_R4240  Tartrate dehydrogenase @ Tartrate decarboxylase @ D-malic enzyme [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
ODI_R2300  4-Hydroxy-2-oxoglutarate aldolase @ 2-dehydro-3-deoxyphosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
ODI_R3411  NAD-dependent formate dehydrogenase delta subunit [KO:K00126] [EC:1.17.1.9]
ODI_R3409  NAD-dependent formate dehydrogenase alpha subunit [KO:K00123] [EC:1.17.1.9]
ODI_R1008  Formate dehydrogenase O beta subunit [KO:K00124]
ODI_R3408  NAD-dependent formate dehydrogenase beta subunit [KO:K00124]
ODI_R1007  Formate dehydrogenase N gamma subunit [KO:K00127]
ODI_R3407  NAD-dependent formate dehydrogenase gamma subunit [KO:K00127]
ODI_R3282  Formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
ODI_R1511  Formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
ODI_R3958  Formamidase [KO:K01455] [EC:3.5.1.49]
ODI_R1646  N-formylglutamate deformylase [KO:K01458] [EC:3.5.1.68]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
odi00010  Glycolysis / Gluconeogenesis
odi00020  Citrate cycle (TCA cycle)
odi00030  Pentose phosphate pathway
odi00053  Ascorbate and aldarate metabolism
odi00071  Fatty acid degradation
odi00230  Purine metabolism
odi00250  Alanine, aspartate and glutamate metabolism
odi00260  Glycine, serine and threonine metabolism
odi00620  Pyruvate metabolism
odi00710  Carbon fixation by Calvin cycle
odi00750  Vitamin B6 metabolism
odi00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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