KEGG   PATHWAY: opr00020
Entry
opr00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Oceanithermus profundus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
opr00020  Citrate cycle (TCA cycle)
opr00020

Module
opr_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:opr00020]
opr_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:opr00020]
opr_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:opr00020]
opr_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:opr00020]
opr_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:opr00020]
Other DBs
GO: 0006099
Organism
Oceanithermus profundus [GN:opr]
Gene
Ocepr_0974  citrate synthase [KO:K01647] [EC:2.3.3.1]
Ocepr_0909  aconitase [KO:K01681] [EC:4.2.1.3]
Ocepr_1260  isocitrate dehydrogenase (NADP) [KO:K00031] [EC:1.1.1.42]
Ocepr_1753  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Ocepr_1761  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Ocepr_1225  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Ocepr_1762  pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Ocepr_1224  pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Ocepr_1027  succinyl-CoA synthetase (ADP-forming) alpha subunit [KO:K01902] [EC:6.2.1.5]
Ocepr_1026  succinyl-CoA synthetase (ADP-forming) beta subunit [KO:K01903] [EC:6.2.1.5]
Ocepr_1510  succinate dehydrogenase subunit A [KO:K00239] [EC:1.3.5.1]
Ocepr_1511  succinate dehydrogenase subunit B [KO:K00240] [EC:1.3.5.1]
Ocepr_1508  succinate dehydrogenase subunit C [KO:K00241]
Ocepr_1509  succinate dehydrogenase subunit D [KO:K00242]
Ocepr_0952  fumarase [KO:K01679] [EC:4.2.1.2]
Ocepr_1164  malate dehydrogenase (NAD) [KO:K00024] [EC:1.1.1.37]
Ocepr_0495  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
Ocepr_1062  thiamine pyrophosphate TPP-binding domain-containing protein [KO:K00170] [EC:1.2.7.1]
Ocepr_1061  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
opr00010  Glycolysis / Gluconeogenesis
opr00061  Fatty acid biosynthesis
opr00071  Fatty acid degradation
opr00190  Oxidative phosphorylation
opr00220  Arginine biosynthesis
opr00250  Alanine, aspartate and glutamate metabolism
opr00280  Valine, leucine and isoleucine degradation
opr00350  Tyrosine metabolism
opr00470  D-Amino acid metabolism
opr00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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