KEGG   PATHWAY: pacr00630
Entry
pacr00630                   Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Pigmentiphaga aceris
Class
Metabolism; Carbohydrate metabolism
Pathway map
pacr00630  Glyoxylate and dicarboxylate metabolism
pacr00630

Module
pacr_M00012  Glyoxylate cycle [PATH:pacr00630]
pacr_M00621  Glycine cleavage system [PATH:pacr00630]
Other DBs
GO: 0046487 0043648
Organism
Pigmentiphaga aceris [GN:pacr]
Gene
FXN63_14615  aceA; isocitrate lyase [KO:K01637] [EC:4.1.3.1]
FXN63_01155  AMP-binding protein [KO:K01895] [EC:6.2.1.1]
FXN63_18990  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
FXN63_07805  AMP-binding protein [KO:K01895] [EC:6.2.1.1]
FXN63_14360  malate synthase A [KO:K01638] [EC:2.3.3.9]
FXN63_10030  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
FXN63_10065  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
FXN63_23845  citryl-CoA lyase [KO:K01647] [EC:2.3.3.1]
FXN63_10005  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
FXN63_04435  aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
FXN63_01220  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
FXN63_10345  acetyl-CoA C-acyltransferase family protein [KO:K00626] [EC:2.3.1.9]
FXN63_17215  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
FXN63_06735  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
FXN63_12160  thiolase family protein [KO:K00626] [EC:2.3.1.9]
FXN63_12850  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
FXN63_10300  phbB; acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
FXN63_20265  FAD-binding protein [KO:K00104] [EC:1.1.99.14]
FXN63_20260  glcE; glycolate oxidase subunit GlcE [KO:K11472] [EC:1.1.99.14]
FXN63_20255  glcF; glycolate oxidase subunit GlcF [KO:K11473] [EC:1.1.99.14]
FXN63_15355  catalase [KO:K03781] [EC:1.11.1.6]
FXN63_23875  catalase [KO:K03781] [EC:1.11.1.6]
FXN63_01250  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
FXN63_12210  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
FXN63_22050  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
FXN63_04245  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
FXN63_13185  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
FXN63_15585  D-glycerate dehydrogenase [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
FXN63_03515  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
FXN63_14775  HAD-IA family hydrolase [KO:K01091] [EC:3.1.3.18]
FXN63_12180  aminotransferase class V-fold PLP-dependent enzyme [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
FXN63_04080  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
FXN63_22640  gcvP; aminomethyl-transferring glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
FXN63_22650  gcvT; glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
FXN63_09875  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
FXN63_10105  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
FXN63_08355  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
FXN63_24160  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
FXN63_22645  gcvH; glycine cleavage system protein GcvH [KO:K02437]
FXN63_04600  NAD(P)-dependent oxidoreductase [KO:K00042] [EC:1.1.1.60]
FXN63_23420  glycerate kinase [KO:K11529] [EC:2.7.1.165]
FXN63_00335  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
FXN63_11355  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
FXN63_13175  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
FXN63_11490  bifunctional 2-keto-4-hydroxyglutarate aldolase/2-keto-3-deoxy-6-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
FXN63_09285  bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
FXN63_08430  formate dehydrogenase subunit delta [KO:K00126] [EC:1.17.1.9]
FXN63_08420  formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
FXN63_08415  formate dehydrogenase [KO:K00124]
FXN63_08410  formate dehydrogenase subunit gamma [KO:K00127]
FXN63_07915  alpha/beta hydrolase [KO:K01432] [EC:3.5.1.9]
FXN63_05895  alpha/beta hydrolase [KO:K01432] [EC:3.5.1.9]
FXN63_08185  kynB; arylformamidase [KO:K07130] [EC:3.5.1.9]
FXN63_20565  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
FXN63_01825  acetamidase/formamidase family protein [KO:K01455] [EC:3.5.1.49]
FXN63_01980  hutG; N-formylglutamate deformylase [KO:K01458] [EC:3.5.1.68]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
pacr00010  Glycolysis / Gluconeogenesis
pacr00020  Citrate cycle (TCA cycle)
pacr00030  Pentose phosphate pathway
pacr00053  Ascorbate and aldarate metabolism
pacr00071  Fatty acid degradation
pacr00230  Purine metabolism
pacr00250  Alanine, aspartate and glutamate metabolism
pacr00260  Glycine, serine and threonine metabolism
pacr00620  Pyruvate metabolism
pacr00710  Carbon fixation by Calvin cycle
pacr00750  Vitamin B6 metabolism
pacr00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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