KEGG   PATHWAY: padl03008
Entry
padl03008                   Pathway                                
Name
Ribosome biogenesis in eukaryotes - Pygoscelis adeliae (Adelie penguin)
Description
Ribosomes are the cellular factories responsible for making proteins. In eukaryotes, ribosome biogenesis involves the production and correct assembly of four rRNAs and about 80 ribosomal proteins. It requires hundreds of factors not present in the mature particle. In the absence of these proteins, ribosome biogenesis is stalled and cell growth is terminated even under optimal growth conditions. The primary pre-rRNA transcript is assembled into the 90S pre-ribosome, which contains both 40S and 60S assembly factors. Within this complex, the pre-rRNA is cleaved. pre-60S ribosomes are subjected to several sequential processing steps in the nucleoplasm involving numerous assembly intermediates before it is exported to the cytoplasm and matured into the 60S ribosomal subunit. The pre-40S ribosome is matured to the small ribosomal subunit in the cytoplasm by cleavage.
Class
Genetic Information Processing; Translation
Pathway map
padl03008  Ribosome biogenesis in eukaryotes
padl03008

Organism
Pygoscelis adeliae (Adelie penguin) [GN:padl]
Gene
103912576  CSNK2A2; casein kinase II subunit alpha' [KO:K03097] [EC:2.7.11.1]
103922230  casein kinase II subunit alpha [KO:K03097] [EC:2.7.11.1]
103923267  NOL6; nucleolar protein 6 [KO:K14544]
103915873  RRP7A; LOW QUALITY PROTEIN: ribosomal RNA-processing protein 7 homolog A [KO:K14545]
103925039  WDR43; WD repeat-containing protein 43 [KO:K14546]
103919744  UTP15; U3 small nucleolar RNA-associated protein 15 homolog [KO:K14549]
103921227  HEATR1; HEAT repeat-containing protein 1 [KO:K14550]
103926167  WDR75; WD repeat-containing protein 75 [KO:K14552]
103916748  UTP18; U3 small nucleolar RNA-associated protein 18 homolog [KO:K14553]
103920855  WDR36; WD repeat-containing protein 36 isoform X1 [KO:K14554]
103921434  TBL3; transducin beta-like protein 3 [KO:K14555]
103922105  WDR3; WD repeat-containing protein 3 [KO:K14556]
103916736  UTP6; LOW QUALITY PROTEIN: U3 small nucleolar RNA-associated protein 6 homolog [KO:K14557]
103922509  PWP2; periodic tryptophan protein 2 homolog [KO:K14558]
103914871  MPHOSPH10; U3 small nucleolar ribonucleoprotein protein MPP10 [KO:K14559]
103915742  TCOF1; treacle protein [KO:K14562]
103924421  NOP58; nucleolar protein 58 [KO:K14565]
103915793  NHP2L1; NHP2-like protein 1 [KO:K12845]
103923334  DKC1; H/ACA ribonucleoprotein complex subunit 4 [KO:K11131] [EC:5.4.99.-]
103926054  GAR1; H/ACA ribonucleoprotein complex subunit 1 [KO:K11128]
103913039  FCF1; rRNA-processing protein FCF1 homolog [KO:K14566]
103923614  UTP14A; U3 small nucleolar RNA-associated protein 14 homolog A [KO:K14567]
103919216  DROSHA; ribonuclease 3 isoform X1 [KO:K03685] [EC:3.1.26.3]
103921899  EMG1; ribosomal RNA small subunit methyltransferase NEP1 [KO:K14568] [EC:2.1.1.260]
103924203  BMS1; ribosome biogenesis protein BMS1 homolog [KO:K14569]
103925781  NAT10; N-acetyltransferase 10 [KO:K14521] [EC:2.3.1.-]
103924945  RCL1; RNA 3'-terminal phosphate cyclase-like protein [KO:K11108]
103917317  POP1; ribonucleases P/MRP protein subunit POP1 [KO:K01164] [EC:3.1.26.5]
103922404  RPP38; ribonuclease P protein subunit p38 [KO:K14523] [EC:3.1.26.5]
103913747  POP4; ribonuclease P protein subunit p29 [KO:K03538] [EC:3.1.26.5]
103922689  POP5; ribonuclease P/MRP protein subunit POP5 [KO:K03537] [EC:3.1.26.5]
103925430  RPP25; ribonuclease P protein subunit p25 [KO:K14525] [EC:3.1.26.5]
103925911  RPP25L; ribonuclease P protein subunit p25-like protein [KO:K14525] [EC:3.1.26.5]
103913914  RPP30; ribonuclease P protein subunit p30 [KO:K03539] [EC:3.1.26.5]
103926215  LOW QUALITY PROTEIN: RNA-directed DNA polymerase from mobile element jockey-like [KO:K14530] [EC:3.1.26.5]
103919072  RPP40; ribonuclease P protein subunit p40 [KO:K14530] [EC:3.1.26.5]
103921084  RNA exonuclease 1 homolog [KO:K14570] [EC:3.1.-.-]
103917599  putative RNA exonuclease NEF-sp [KO:K14570] [EC:3.1.-.-]
103921173  REXO1; RNA exonuclease 1 homolog [KO:K14570] [EC:3.1.-.-]
103916558  REXO2; oligoribonuclease, mitochondrial [KO:K13288] [EC:3.1.-.-]
103917881  XRN1; LOW QUALITY PROTEIN: 5'-3' exoribonuclease 1 [KO:K12618] [EC:3.1.13.-]
103922061  XRN2; 5'-3' exoribonuclease 2 [KO:K12619] [EC:3.1.13.-]
103918260  GTPBP4; LOW QUALITY PROTEIN: nucleolar GTP-binding protein 1 [KO:K06943]
103920488  GNL2; nucleolar GTP-binding protein 2 [KO:K14537]
103915093  GNL3; guanine nucleotide-binding protein-like 3 [KO:K14538]
103925020  NVL; nuclear valosin-containing protein-like [KO:K14571]
103924551  MDN1; midasin [KO:K14572]
103918779  NOB1; RNA-binding protein NOB1 [KO:K11883]
103914331  RAN; GTP-binding nuclear protein Ran [KO:K07936]
103913131  XPO1; exportin-1 [KO:K14290]
103925291  NMD3; 60S ribosomal export protein NMD3 [KO:K07562]
103920155  NXT2; NTF2-related export protein 2 [KO:K14285]
103912417  EIF6; eukaryotic translation initiation factor 6 [KO:K03264]
103912891  SBDS; ribosome maturation protein SBDS [KO:K14574]
103922721  EFTUD1; elongation factor Tu GTP-binding domain-containing protein 1 [KO:K14536] [EC:3.6.5.-]
103913854  LSG1; large subunit GTPase 1 homolog [KO:K14539] [EC:3.6.1.-]
103926142  SPATA5; spermatogenesis-associated protein 5 [KO:K14575]
103923433  AK6; adenylate kinase isoenzyme 6 [KO:K18532] [EC:2.7.4.3]
103919022  RIOK1; serine/threonine-protein kinase RIO1 isoform X1 [KO:K07178] [EC:2.7.11.1]
103915041  RIOK2; serine/threonine-protein kinase RIO2 [KO:K07179] [EC:2.7.11.1]
Reference
  Authors
Freed EF, Bleichert F, Dutca LM, Baserga SJ
  Title
When ribosomes go bad: diseases of ribosome biogenesis.
  Journal
Mol Biosyst 6:481-93 (2010)
DOI:10.1039/b919670f
Reference
  Authors
Perez-Fernandez J, Roman A, De Las Rivas J, Bustelo XR, Dosil M
  Title
The 90S preribosome is a multimodular structure that is assembled through a hierarchical mechanism.
  Journal
Mol Cell Biol 27:5414-29 (2007)
DOI:10.1128/MCB.00380-07
Reference
  Authors
Strunk BS, Karbstein K
  Title
Powering through ribosome assembly.
  Journal
RNA 15:2083-104 (2009)
DOI:10.1261/rna.1792109
Reference
  Authors
Granneman S, Baserga SJ
  Title
Ribosome biogenesis: of knobs and RNA processing.
  Journal
Exp Cell Res 296:43-50 (2004)
DOI:10.1016/j.yexcr.2004.03.016
Reference
  Authors
Kressler D, Hurt E, Bassler J
  Title
Driving ribosome assembly.
  Journal
Biochim Biophys Acta 1803:673-83 (2010)
DOI:10.1016/j.bbamcr.2009.10.009
Related
pathway
padl03010  Ribosome
KO pathway
ko03008   
LinkDB

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