KEGG   PATHWAY: palz00630
Entry
palz00630                   Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Populus alba (white poplar)
Class
Metabolism; Carbohydrate metabolism
Pathway map
palz00630  Glyoxylate and dicarboxylate metabolism
palz00630

Module
palz_M00012  Glyoxylate cycle [PATH:palz00630]
palz_M00532  Photorespiration [PATH:palz00630]
palz_M00621  Glycine cleavage system [PATH:palz00630]
Other DBs
GO: 0046487 0043648
Organism
Populus alba (white poplar) [GN:palz]
Gene
118032137  isocitrate lyase-like [KO:K01637] [EC:4.1.3.1 4.1.3.30]
118054995  isocitrate lyase [KO:K01637] [EC:4.1.3.1 4.1.3.30]
118041831  acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal [KO:K01895] [EC:6.2.1.1]
118062484  acetate/butyrate--CoA ligase AAE7, peroxisomal-like [KO:K01913] [EC:6.2.1.1 6.2.1.2]
118057601  malate synthase, glyoxysomal [KO:K01638] [EC:2.3.3.9]
118042194  malate dehydrogenase, cytoplasmic-like isoform X1 [KO:K00025] [EC:1.1.1.37]
118042251  malate dehydrogenase-like [KO:K00025] [EC:1.1.1.37]
118057252  malate dehydrogenase [KO:K00025] [EC:1.1.1.37]
118048848  malate dehydrogenase-like [KO:K00025] [EC:1.1.1.37]
118051793  malate dehydrogenase, glyoxysomal-like [KO:K00026] [EC:1.1.1.37]
118063178  malate dehydrogenase, glyoxysomal-like [KO:K00026] [EC:1.1.1.37]
118063548  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
118042730  malate dehydrogenase, chloroplastic-like [KO:K00026] [EC:1.1.1.37]
118042731  malate dehydrogenase, chloroplastic-like [KO:K00026] [EC:1.1.1.37]
118054103  malate dehydrogenase 1, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
118055136  malate dehydrogenase, chloroplastic-like [KO:K00026] [EC:1.1.1.37]
118035036  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
118048618  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
118041821  citrate synthase, glyoxysomal-like [KO:K01647] [EC:2.3.3.1]
118045628  citrate synthase, mitochondrial isoform X1 [KO:K01647] [EC:2.3.3.1]
118045907  citrate synthase, glyoxysomal [KO:K01647] [EC:2.3.3.1]
118030570  LOW QUALITY PROTEIN: aconitate hydratase 1-like [KO:K01681] [EC:4.2.1.3]
118042678  aconitate hydratase, cytoplasmic-like isoform X1 [KO:K01681] [EC:4.2.1.3]
118040387  aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
118029900  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
118032251  acetyl-CoA acetyltransferase, cytosolic 1-like isoform X1 [KO:K00626] [EC:2.3.1.9]
118048920  acetyl-CoA acetyltransferase, cytosolic 1 [KO:K00626] [EC:2.3.1.9]
118030402  peroxisomal (S)-2-hydroxy-acid oxidase-like isoform X1 [KO:K11517] [EC:1.1.3.15]
118038000  peroxisomal (S)-2-hydroxy-acid oxidase GLO4-like isoform X1 [KO:K11517] [EC:1.1.3.15]
118038001  peroxisomal (S)-2-hydroxy-acid oxidase GLO4-like [KO:K11517] [EC:1.1.3.15]
118038002  peroxisomal (S)-2-hydroxy-acid oxidase GLO4-like [KO:K11517] [EC:1.1.3.15]
118038161  peroxisomal (S)-2-hydroxy-acid oxidase [KO:K11517] [EC:1.1.3.15]
118038335  (S)-2-hydroxy-acid oxidase GLO1 [KO:K11517] [EC:1.1.3.15]
118029955  catalase-2-like [KO:K03781] [EC:1.11.1.6]
118042081  catalase isozyme 1 [KO:K03781] [EC:1.11.1.6]
118061924  catalase isozyme 1-like [KO:K03781] [EC:1.11.1.6]
118042290  glyoxylate/hydroxypyruvate reductase HPR3-like [KO:K15919] [EC:1.1.1.79 1.1.1.81]
118041265  glyoxylate/hydroxypyruvate reductase HPR3-like [KO:K15919] [EC:1.1.1.79 1.1.1.81]
118041916  glyoxylate/hydroxypyruvate reductase HPR3-like [KO:K15919] [EC:1.1.1.79 1.1.1.81]
118042289  glyoxylate/hydroxypyruvate reductase HPR3-like [KO:K15919] [EC:1.1.1.79 1.1.1.81]
118042292  glyoxylate/hydroxypyruvate reductase HPR3-like [KO:K15919] [EC:1.1.1.79 1.1.1.81]
118033788  glyoxylate/hydroxypyruvate reductase HPR3-like [KO:K15919] [EC:1.1.1.79 1.1.1.81]
118038103  glyoxylate/hydroxypyruvate reductase A HPR2 [KO:K15919] [EC:1.1.1.79 1.1.1.81]
118031015  glyoxylate/succinic semialdehyde reductase 2, chloroplastic isoform X1 [KO:K18121] [EC:1.1.1.79 1.1.1.-]
118053011  glyoxylate/succinic semialdehyde reductase 1 [KO:K18121] [EC:1.1.1.79 1.1.1.-]
118040445  glycerate dehydrogenase [KO:K15893] [EC:1.1.1.29]
118043152  phosphoglycolate phosphatase 1A, chloroplastic-like [KO:K19269] [EC:3.1.3.18 3.1.3.48]
118055804  phosphoglycolate phosphatase 1A, chloroplastic-like [KO:K19269] [EC:3.1.3.18 3.1.3.48]
118036604  phosphoglycolate phosphatase 2 [KO:K19269] [EC:3.1.3.18 3.1.3.48]
4178172  rbcL; ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [KO:K01601] [EC:4.1.1.39]
118045964  LOW QUALITY PROTEIN: ribulose bisphosphate carboxylase large chain [KO:K01601] [EC:4.1.1.39]
118058060  ribulose bisphosphate carboxylase large chain-like [KO:K01601] [EC:4.1.1.39]
118055981  ribulose bisphosphate carboxylase small chain, chloroplastic-like [KO:K01602] [EC:4.1.1.39]
118029738  ribulose bisphosphate carboxylase small chain, chloroplastic-like [KO:K01602] [EC:4.1.1.39]
118051575  ribulose bisphosphate carboxylase small chain clone 512-like [KO:K01602] [EC:4.1.1.39]
118033013  serine--glyoxylate aminotransferase-like [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
118035180  serine--glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
118045367  glutamate--glyoxylate aminotransferase 2 [KO:K14272] [EC:2.6.1.4 2.6.1.2 2.6.1.44]
118037955  glutamate--glyoxylate aminotransferase 2-like isoform X1 [KO:K14272] [EC:2.6.1.4 2.6.1.2 2.6.1.44]
118053033  ferredoxin-dependent glutamate synthase, chloroplastic isoform X1 [KO:K00284] [EC:1.4.7.1]
118033263  ferredoxin-dependent glutamate synthase, chloroplastic isoform X1 [KO:K00284] [EC:1.4.7.1]
118044297  glutamine synthetase nodule isozyme [KO:K01915] [EC:6.3.1.2]
118034551  glutamine synthetase leaf isozyme, chloroplastic [KO:K01915] [EC:6.3.1.2]
118057048  glutamine synthetase nodule isozyme-like [KO:K01915] [EC:6.3.1.2]
118049445  glutamine synthetase nodule isozyme [KO:K01915] [EC:6.3.1.2]
118049724  glutamine synthetase cytosolic isozyme 1-1 [KO:K01915] [EC:6.3.1.2]
118061105  glutamine synthetase leaf isozyme, chloroplastic-like [KO:K01915] [EC:6.3.1.2]
118028814  glutamine synthetase cytosolic isozyme 1 [KO:K01915] [EC:6.3.1.2]
118050942  glutamine synthetase cytosolic isozyme 2-like [KO:K01915] [EC:6.3.1.2]
118041724  serine hydroxymethyltransferase 7-like [KO:K00600] [EC:2.1.2.1]
118030822  serine hydroxymethyltransferase 3, chloroplastic [KO:K00600] [EC:2.1.2.1]
118042329  serine hydroxymethyltransferase 7-like [KO:K00600] [EC:2.1.2.1]
118031297  serine hydroxymethyltransferase, mitochondrial-like [KO:K00600] [EC:2.1.2.1]
118055210  serine hydroxymethyltransferase 4 [KO:K00600] [EC:2.1.2.1]
118045124  serine hydroxymethyltransferase 1, mitochondrial isoform X1 [KO:K00600] [EC:2.1.2.1]
118048709  serine hydroxymethyltransferase 4-like [KO:K00600] [EC:2.1.2.1]
118060215  serine hydroxymethyltransferase 1, mitochondrial-like [KO:K00600] [EC:2.1.2.1]
118029336  serine hydroxymethyltransferase 7-like [KO:K00600] [EC:2.1.2.1]
118030795  glycine dehydrogenase (decarboxylating), mitochondrial [KO:K00281] [EC:1.4.4.2]
118059257  aminomethyltransferase, mitochondrial [KO:K00605] [EC:2.1.2.10]
118061376  aminomethyltransferase, mitochondrial-like [KO:K00605] [EC:2.1.2.10]
118046482  dihydrolipoyl dehydrogenase 2, chloroplastic-like [KO:K00382] [EC:1.8.1.4]
118062423  dihydrolipoyl dehydrogenase 2, mitochondrial [KO:K00382] [EC:1.8.1.4]
118062478  dihydrolipoyl dehydrogenase 2, chloroplastic-like isoform X1 [KO:K00382] [EC:1.8.1.4]
118028308  glycine cleavage system H protein 2, mitochondrial [KO:K02437]
118039289  glycine cleavage system H protein, mitochondrial-like [KO:K02437]
118060635  glycine cleavage system H protein 2, mitochondrial-like [KO:K02437]
118051758  glycine cleavage system H protein 3, mitochondrial-like [KO:K02437]
118037975  D-glycerate 3-kinase, chloroplastic-like isoform X1 [KO:K15918] [EC:2.7.1.31]
118033743  formate dehydrogenase, mitochondrial [KO:K00122] [EC:1.17.1.9]
118062967  formyltetrahydrofolate deformylase 1, mitochondrial-like isoform X1 [KO:K01433] [EC:3.5.1.10]
118039128  formyltetrahydrofolate deformylase 1, mitochondrial isoform X1 [KO:K01433] [EC:3.5.1.10]
118045747  formamidase-like isoform X1 [KO:K01455] [EC:3.5.1.49]
118033676  oxalate--CoA ligase-like isoform X1 [KO:K22133] [EC:6.2.1.8]
118033896  oxalate--CoA ligase-like [KO:K22133] [EC:6.2.1.8]
118056260  oxalate--CoA ligase [KO:K22133] [EC:6.2.1.8]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
palz00010  Glycolysis / Gluconeogenesis
palz00020  Citrate cycle (TCA cycle)
palz00030  Pentose phosphate pathway
palz00053  Ascorbate and aldarate metabolism
palz00071  Fatty acid degradation
palz00230  Purine metabolism
palz00250  Alanine, aspartate and glutamate metabolism
palz00260  Glycine, serine and threonine metabolism
palz00620  Pyruvate metabolism
palz00710  Carbon fixation by Calvin cycle
palz00750  Vitamin B6 metabolism
palz00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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