KEGG   PATHWAY: pasg02025
Entry
pasg02025                   Pathway                                
Name
Biofilm formation - Pseudomonas aeruginosa - Pseudomonas asgharzadehiana
Description
Surface colonization and subsequent biofilm formation and development provide numerous advantages to microorganisms. The main key actors relevant in the regulation of biofilm formation by Pseudomonas aeruginosa include cAMP/Vfr signaling, quorum sensing (QS) systems, Gac/Rsm pathway, and c-di-GMP signaling. cAMP/Vfr signaling regulates the transcription of hundreds of genes encoding diverse virulence factors, including the type 2 secretion system and type 3 secretion system and their associated toxins, type IV pili, and flagella. It is demonstrated that the accumulation of cAMP inhibits the attachment phase of biofilm formation. The QS systems are arranged hierarchically with the las system positively regulating both the rhl and PQS systems. These three QS systems are involved in the regulation of virulence factor production, biofilm maturation, and motility phenotypes. GacS/GacA two-component system is promoting the expression of two small regulatory RNAs, RsmY and RsmZ, which sequester the translational repressor RsmA. Titration of RsmA induces the production of sessile and biofilm determinants, whereas free RsmA leads to a planktonic and more virulent lifestyle. c-di-GMP is a ubiquitous bacterial second messenger. Synthesis and degradation of c-di-GMP is facilitated by diguanylate cyclases (DGC) and phosphodiesterases (PDE). High intracellular levels of c-di-GMP evoke the processes leading to the production of biofilm matrix, while a decrease in its level causes an increase in cell motility and transition into the planktonic forms of growth.
Class
Cellular Processes; Cellular community - prokaryotes
Pathway map
pasg02025  Biofilm formation - Pseudomonas aeruginosa
pasg02025

Organism
Pseudomonas asgharzadehiana [GN:pasg]
Gene
KSS96_26885  type IV pili methyl-accepting chemotaxis transducer N-terminal domain-containing protein [KO:K02660]
KSS96_26890  chemotaxis protein CheW [KO:K02659]
KSS96_26880  Hpt domain-containing protein [KO:K06596]
KSS96_26875  chemotaxis protein CheW [KO:K06598]
KSS96_26895  pilH; twitching motility response regulator PilH [KO:K02658]
KSS96_26900  pilG; twitching motility response regulator PilG [KO:K02657]
KSS96_17205  phosphodiesterase [KO:K03651] [EC:3.1.4.53]
KSS96_03425  cpdA; 3',5'-cyclic-AMP phosphodiesterase [KO:K03651] [EC:3.1.4.53]
KSS96_25975  crp; cAMP-activated global transcriptional regulator CRP [KO:K10914]
KSS96_01810  Crp/Fnr family transcriptional regulator [KO:K10914]
KSS96_08270  cyclic nucleotide-binding domain-containing protein [KO:K10914]
KSS96_20535  sigma-54 dependent transcriptional regulator [KO:K10941]
KSS96_26580  alpha/beta hydrolase [KO:K18100] [EC:2.4.1.-]
KSS96_26000  trpE; anthranilate synthase component I [KO:K01657] [EC:4.1.3.27]
KSS96_25995  aminodeoxychorismate/anthranilate synthase component II [KO:K01658] [EC:4.1.3.27]
KSS96_17595  response regulator [KO:K07678] [EC:2.7.13.3]
KSS96_25150  response regulator [KO:K20971]
KSS96_03940  response regulator [KO:K20972]
KSS96_10640  uvrY; UvrY/SirA/GacA family response regulator transcription factor [KO:K07689]
KSS96_18510  response regulator transcription factor [KO:K07689]
KSS96_19160  csrA; carbon storage regulator CsrA [KO:K03563]
KSS96_19975  csrA; carbon storage regulator CsrA [KO:K03563]
KSS96_21995  csrA; carbon storage regulator CsrA [KO:K03563]
KSS96_09155  response regulator [KO:K20973] [EC:2.7.13.3]
KSS96_09535  response regulator [KO:K20974] [EC:2.7.13.3]
KSS96_18550  PAS domain-containing hybrid sensor histidine kinase/response regulator [KO:K20975] [EC:2.7.13.3]
KSS96_20480  Hpt domain-containing protein [KO:K20976]
KSS96_20485  fused response regulator/phosphatase [KO:K20977]
KSS96_20490  STAS domain-containing protein [KO:K20978]
KSS96_21925  flgM; flagellar biosynthesis anti-sigma factor FlgM [KO:K02398]
KSS96_20410  RNA polymerase sigma factor FliA [KO:K02405]
KSS96_00260  serine/threonine-protein kinase [KO:K11912] [EC:2.7.11.1]
KSS96_00265  protein phosphatase 2C domain-containing protein [KO:K11915] [EC:3.1.3.16]
KSS96_13425  serine/threonine-protein phosphatase [KO:K11915] [EC:3.1.3.16]
KSS96_00270  tagF; type VI secretion system-associated protein TagF [KO:K11890]
KSS96_00275  tssM; type VI secretion system membrane subunit TssM [KO:K11891]
KSS96_13420  tssM; type VI secretion system membrane subunit TssM [KO:K11891]
KSS96_00285  tssK; type VI secretion system baseplate subunit TssK [KO:K11893]
KSS96_13410  tssK; type VI secretion system baseplate subunit TssK [KO:K11893]
KSS96_00295  tagH; type VI secretion system-associated FHA domain protein TagH [KO:K11913]
KSS96_00300  tssA; type VI secretion system protein TssA [KO:K11902]
KSS96_00305  tssB; type VI secretion system contractile sheath small subunit [KO:K11901]
KSS96_13365  tssB; type VI secretion system contractile sheath small subunit [KO:K11901]
KSS96_00310  tssC; type VI secretion system contractile sheath large subunit [KO:K11900]
KSS96_13370  tssC; type VI secretion system contractile sheath large subunit [KO:K11900]
KSS96_00315  type VI secretion system tube protein Hcp [KO:K11903]
KSS96_13355  Hcp family type VI secretion system effector [KO:K11903]
KSS96_00330  tssG; type VI secretion system baseplate subunit TssG [KO:K11895]
KSS96_13385  tssG; type VI secretion system baseplate subunit TssG [KO:K11895]
KSS96_00335  tssH; type VI secretion system ATPase TssH [KO:K11907]
KSS96_13390  AAA family ATPase [KO:K11907]
KSS96_06915  methyl-accepting chemotaxis protein [KO:K13487]
KSS96_06935  hybrid sensor histidine kinase/response regulator [KO:K13490]
KSS96_06920  chemotaxis protein CheW [KO:K13488]
KSS96_06930  chemotaxis protein CheW [KO:K13489]
KSS96_06940  chemotaxis response regulator protein-glutamate methylesterase [KO:K13491] [EC:3.1.1.61]
KSS96_06945  diguanylate cyclase [KO:K11444] [EC:2.7.7.65]
KSS96_24115  diguanylate cyclase [KO:K21021] [EC:2.7.7.65]
KSS96_15940  EAL domain-containing protein [KO:K21023] [EC:2.7.7.65]
KSS96_22495  EAL domain-containing protein [KO:K21024] [EC:3.1.4.52]
KSS96_21050  mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase [KO:K16011] [EC:2.7.7.13 5.3.1.8]
KSS96_05640  mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase [KO:K16011] [EC:2.7.7.13 5.3.1.8]
KSS96_05685  alginate biosynthesis protein Alg44 [KO:K19291] [EC:2.4.1.33]
Compound
C00044  GTP
C00575  3',5'-Cyclic AMP
C11837  N-Butyryl-L-homoserine lactone
C11848  2-Heptyl-3-hydroxy-quinolone
C16463  3',5'-Cyclic diGMP
C18076  5'-Phosphoguanylyl(3'->5')guanosine
C20643  2-Heptyl-4(1H)-quinolone
C21201  N-3-Oxo-dodecanoyl-L-homoserine lactone
Reference
  Authors
Coggan KA, Wolfgang MC
  Title
Global regulatory pathways and cross-talk control pseudomonas aeruginosa environmental lifestyle and virulence phenotype.
  Journal
Curr Issues Mol Biol 14:47-70 (2012)
Reference
  Authors
Rasamiravaka T, Labtani Q, Duez P, El Jaziri M
  Title
The formation of biofilms by Pseudomonas aeruginosa: a review of the natural and synthetic compounds interfering with control mechanisms.
  Journal
Biomed Res Int 2015:759348 (2015)
DOI:10.1155/2015/759348
Reference
  Authors
Valentini M, Filloux A
  Title
Biofilms and Cyclic di-GMP (c-di-GMP) Signaling: Lessons from Pseudomonas aeruginosa and Other Bacteria.
  Journal
J Biol Chem 291:12547-55 (2016)
DOI:10.1074/jbc.R115.711507
Reference
  Authors
Hengge R
  Title
Principles of c-di-GMP signalling in bacteria.
  Journal
Nat Rev Microbiol 7:263-73 (2009)
DOI:10.1038/nrmicro2109
Reference
  Authors
Liang ZX
  Title
The expanding roles of c-di-GMP in the biosynthesis of exopolysaccharides and secondary metabolites.
  Journal
Nat Prod Rep 32:663-83 (2015)
DOI:10.1039/c4np00086b
Reference
  Authors
Fulcher NB, Holliday PM, Klem E, Cann MJ, Wolfgang MC
  Title
The Pseudomonas aeruginosa Chp chemosensory system regulates intracellular cAMP levels by modulating adenylate cyclase activity.
  Journal
Mol Microbiol 76:889-904 (2010)
DOI:10.1111/j.1365-2958.2010.07135.x
Reference
  Authors
Marsden AE, Intile PJ, Schulmeyer KH, Simmons-Patterson ER, Urbanowski ML, Wolfgang MC, Yahr TL
  Title
Vfr Directly Activates exsA Transcription To Regulate Expression of the Pseudomonas aeruginosa Type III Secretion System.
  Journal
J Bacteriol 198:1442-50 (2016)
DOI:10.1128/JB.00049-16
Reference
  Authors
Brencic A, Lory S
  Title
Determination of the regulon and identification of novel mRNA targets of Pseudomonas aeruginosa RsmA.
  Journal
Mol Microbiol 72:612-32 (2009)
DOI:10.1111/j.1365-2958.2009.06670.x
Reference
  Authors
Hsu JL, Chen HC, Peng HL, Chang HY
  Title
Characterization of the histidine-containing phosphotransfer protein B-mediated multistep phosphorelay system in Pseudomonas aeruginosa PAO1.
  Journal
J Biol Chem 283:9933-44 (2008)
DOI:10.1074/jbc.M708836200
Reference
  Authors
Guvener ZT, Harwood CS
  Title
Subcellular location characteristics of the Pseudomonas aeruginosa GGDEF protein, WspR, indicate that it produces cyclic-di-GMP in response to growth on surfaces.
  Journal
Mol Microbiol 66:1459-73 (2007)
DOI:10.1111/j.1365-2958.2007.06008.x
Reference
  Authors
Irie Y, Starkey M, Edwards AN, Wozniak DJ, Romeo T, Parsek MR
  Title
Pseudomonas aeruginosa biofilm matrix polysaccharide Psl is regulated transcriptionally by RpoS and post-transcriptionally by RsmA.
  Journal
Mol Microbiol 78:158-72 (2010)
DOI:10.1111/j.1365-2958.2010.07320.x
Related
pathway
pasg02024  Quorum sensing
pasg02040  Flagellar assembly
pasg03070  Bacterial secretion system
KO pathway
ko02025   
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