KEGG   PATHWAY: pavi00630
Entry
pavi00630                   Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Prunus avium (sweet cherry)
Class
Metabolism; Carbohydrate metabolism
Pathway map
pavi00630  Glyoxylate and dicarboxylate metabolism
pavi00630

Module
pavi_M00012  Glyoxylate cycle [PATH:pavi00630]
pavi_M00621  Glycine cleavage system [PATH:pavi00630]
Other DBs
GO: 0046487 0043648
Organism
Prunus avium (sweet cherry) [GN:pavi]
Gene
110764229  isocitrate lyase-like [KO:K01637] [EC:4.1.3.1]
110764230  isocitrate lyase-like [KO:K01637] [EC:4.1.3.1]
110764235  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
110764325  acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal isoform X1 [KO:K01895] [EC:6.2.1.1]
110763740  acetate/butyrate--CoA ligase AAE7, peroxisomal [KO:K01913] [EC:6.2.1.1 6.2.1.2]
110745198  malate synthase, glyoxysomal [KO:K01638] [EC:2.3.3.9]
110748944  malate dehydrogenase [KO:K00025] [EC:1.1.1.37]
110748679  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
110760310  malate dehydrogenase, cytoplasmic-like isoform X1 [KO:K00025] [EC:1.1.1.37]
110771779  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
110745262  malate dehydrogenase, glyoxysomal-like [KO:K00026] [EC:1.1.1.37]
110762351  malate dehydrogenase, chloroplastic [KO:K00026] [EC:1.1.1.37]
110755010  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
110757231  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
110744480  citrate synthase, glyoxysomal [KO:K01647] [EC:2.3.3.1]
110772125  citrate synthase, mitochondrial isoform X1 [KO:K01647] [EC:2.3.3.1]
110764244  aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
110761354  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
110749972  acetyl-CoA acetyltransferase, cytosolic 1 [KO:K00626] [EC:2.3.1.9]
110768585  acetyl-CoA acetyltransferase, cytosolic 1 [KO:K00626] [EC:2.3.1.9]
110752385  peroxisomal (S)-2-hydroxy-acid oxidase GLO4-like [KO:K11517] [EC:1.1.3.15]
110774086  peroxisomal (S)-2-hydroxy-acid oxidase GLO1 isoform X1 [KO:K11517] [EC:1.1.3.15]
110768868  peroxisomal (S)-2-hydroxy-acid oxidase GLO4-like [KO:K11517] [EC:1.1.3.15]
110768880  peroxisomal (S)-2-hydroxy-acid oxidase GLO3-like [KO:K11517] [EC:1.1.3.15]
110772101  peroxisomal (S)-2-hydroxy-acid oxidase GLO1 isoform X1 [KO:K11517] [EC:1.1.3.15]
110769455  peroxisomal (S)-2-hydroxy-acid oxidase-like isoform X1 [KO:K11517] [EC:1.1.3.15]
110768173  catalase isozyme 1-like [KO:K03781] [EC:1.11.1.6]
110768174  catalase isozyme 1 [KO:K03781] [EC:1.11.1.6]
110766518  glyoxylate/hydroxypyruvate reductase HPR3-like [KO:K15919] [EC:1.1.1.79 1.1.1.81]
110766557  glyoxylate/hydroxypyruvate reductase HPR3-like [KO:K15919] [EC:1.1.1.79 1.1.1.81]
110759436  glyoxylate/succinic semialdehyde reductase 2, chloroplastic [KO:K18121] [EC:1.1.1.79 1.1.1.-]
110770310  glyoxylate/succinic semialdehyde reductase 1 [KO:K18121] [EC:1.1.1.79 1.1.1.-]
110756830  glycerate dehydrogenase-like [KO:K15893] [EC:1.1.1.29]
110753798  glycerate dehydrogenase [KO:K15893] [EC:1.1.1.29]
110768639  phosphoglycolate phosphatase 2 [KO:K19269] [EC:3.1.3.18 3.1.3.48]
110769775  phosphoglycolate phosphatase 1B, chloroplastic-like [KO:K19269] [EC:3.1.3.18 3.1.3.48]
110753434  ribulose bisphosphate carboxylase small chain clone 512-like [KO:K01602] [EC:4.1.1.39]
110768325  ribulose bisphosphate carboxylase small chain, chloroplastic-like [KO:K01602] [EC:4.1.1.39]
110764120  ribulose bisphosphate carboxylase small chain, chloroplastic-like isoform X1 [KO:K01602] [EC:4.1.1.39]
110761583  serine--glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
110760503  glutamate--glyoxylate aminotransferase 2 [KO:K14272] [EC:2.6.1.4 2.6.1.2 2.6.1.44]
110758098  ferredoxin-dependent glutamate synthase, chloroplastic [KO:K00284] [EC:1.4.7.1]
110750454  glutamine synthetase leaf isozyme, chloroplastic [KO:K01915] [EC:6.3.1.2]
110771022  glutamine synthetase cytosolic isozyme [KO:K01915] [EC:6.3.1.2]
110746697  glutamine synthetase nodule isozyme isoform X1 [KO:K01915] [EC:6.3.1.2]
110764243  glutamine synthetase nodule isozyme-like isoform X1 [KO:K01915] [EC:6.3.1.2]
110754635  glutamine synthetase nodule isozyme-like [KO:K01915] [EC:6.3.1.2]
110771015  serine hydroxymethyltransferase 3, chloroplastic-like [KO:K00600] [EC:2.1.2.1]
110745136  serine hydroxymethyltransferase, mitochondrial [KO:K00600] [EC:2.1.2.1]
110753141  serine hydroxymethyltransferase 7 [KO:K00600] [EC:2.1.2.1]
110753149  serine hydroxymethyltransferase 7-like [KO:K00600] [EC:2.1.2.1]
110745973  serine hydroxymethyltransferase 3, chloroplastic-like [KO:K00600] [EC:2.1.2.1]
110774436  serine hydroxymethyltransferase 4 [KO:K00600] [EC:2.1.2.1]
110772100  serine hydroxymethyltransferase, mitochondrial-like [KO:K00600] [EC:2.1.2.1]
110764593  glycine dehydrogenase (decarboxylating), mitochondrial isoform X1 [KO:K00281] [EC:1.4.4.2]
110763069  aminomethyltransferase, mitochondrial [KO:K00605] [EC:2.1.2.10]
110751855  dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
110763925  dihydrolipoyl dehydrogenase 1, chloroplastic-like [KO:K00382] [EC:1.8.1.4]
110759962  dihydrolipoyl dehydrogenase, mitochondrial-like [KO:K00382] [EC:1.8.1.4]
110768801  glycine cleavage system H protein 3, mitochondrial [KO:K02437]
110768554  glycine cleavage system H protein 2, mitochondrial [KO:K02437]
110760091  D-glycerate 3-kinase, chloroplastic [KO:K15918] [EC:2.7.1.31]
110759019  formate dehydrogenase, mitochondrial [KO:K00122] [EC:1.17.1.9]
110757112  formyltetrahydrofolate deformylase 1, mitochondrial-like isoform X1 [KO:K01433] [EC:3.5.1.10]
110772775  uncharacterized protein LOC110772775 isoform X1 [KO:K01455] [EC:3.5.1.49]
110758010  oxalate--CoA ligase [KO:K22133] [EC:6.2.1.8]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
pavi00010  Glycolysis / Gluconeogenesis
pavi00020  Citrate cycle (TCA cycle)
pavi00030  Pentose phosphate pathway
pavi00053  Ascorbate and aldarate metabolism
pavi00071  Fatty acid degradation
pavi00230  Purine metabolism
pavi00250  Alanine, aspartate and glutamate metabolism
pavi00260  Glycine, serine and threonine metabolism
pavi00620  Pyruvate metabolism
pavi00710  Carbon fixation by Calvin cycle
pavi00750  Vitamin B6 metabolism
pavi00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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