KEGG   PATHWAY: pbae03430
Entry
pbae03430                   Pathway                                
Name
Mismatch repair - Roseinatronobacter sp. S2
Description
DNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preventing mutations from becoming permanent in dividing cells. MMR also suppresses homologous recombination and was recently shown to play a role in DNA damage signaling. Defects in MMR are associated with genome-wide instability, predisposition to certain types of cancer including HNPCC, resistance to certain chemotherapeutic agents, and abnormalities in meiosis and sterility in mammalian systems.
The Escherichia coli MMR pathway has been extensively studied and is well characterized. In E. coli, the mismatch-activated MutS-MutL-ATP complex licenses MutH to incise the nearest unmethylated GATC sequence. UvrD and an exonuclease generate a gap. This gap is filled by pol III and DNA ligase. The GATC sites are then methylated by Dam. Several human MMR proteins have been identified based on their homology to E. coli MMR proteins. These include human homologs of MutS and MutL. Although E. coli MutS and MutL proteins are homodimers, human MutS and MutL homologs are heterodimers. The role of hemimethylated dGATC sites as a signal for strand discrimination is not conserved from E. coli to human. Human MMR is presumed to be nick-directed in vivo, and is thought to discriminate daughter and template strands using a strand-specific nick.
Class
Genetic Information Processing; Replication and repair
Pathway map
pbae03430  Mismatch repair
pbae03430

Other DBs
GO: 0006298
Organism
Roseinatronobacter sp. S2 [GN:pbae]
Gene
P8S53_01770  mutS; DNA mismatch repair protein MutS [KO:K03555]
P8S53_11370  mutL; DNA mismatch repair endonuclease MutL [KO:K03572]
P8S53_13545  UvrD-helicase domain-containing protein [KO:K03657] [EC:5.6.2.4]
P8S53_00790  xseA; exodeoxyribonuclease VII large subunit [KO:K03601] [EC:3.1.11.6]
P8S53_04080  exodeoxyribonuclease VII small subunit [KO:K03602] [EC:3.1.11.6]
P8S53_04375  recJ; single-stranded-DNA-specific exonuclease RecJ [KO:K07462] [EC:3.1.-.-]
P8S53_08710  ssb; single-stranded DNA-binding protein [KO:K03111]
P8S53_20940  single-stranded DNA-binding protein [KO:K03111]
P8S53_21040  single-stranded DNA-binding protein [KO:K03111]
P8S53_01305  dnaE; DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
P8S53_03220  dnaN; DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
P8S53_10910  DNA polymerase III subunit gamma/tau [KO:K02343] [EC:2.7.7.7]
P8S53_03425  hypothetical protein [KO:K02340] [EC:2.7.7.7]
P8S53_13655  DNA polymerase III subunit delta' [KO:K02341] [EC:2.7.7.7]
P8S53_01685  dnaQ; DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
P8S53_05605  exonuclease domain-containing protein [KO:K02342] [EC:2.7.7.7]
P8S53_07305  3'-5' exonuclease [KO:K02342] [EC:2.7.7.7]
P8S53_11120  DNA polymerase III subunit chi [KO:K02339] [EC:2.7.7.7]
P8S53_08520  ligA; NAD-dependent DNA ligase LigA [KO:K01972] [EC:6.5.1.2]
Reference
  Authors
Jiricny J.
  Title
The multifaceted mismatch-repair system.
  Journal
Nat Rev Mol Cell Biol 7:335-46 (2006)
DOI:10.1038/nrm1907
Reference
  Authors
Li GM.
  Title
Mechanisms and functions of DNA mismatch repair.
  Journal
Cell Res 18:85-98 (2008)
DOI:10.1038/cr.2007.115
Reference
  Authors
Marti TM, Kunz C, Fleck O.
  Title
DNA mismatch repair and mutation avoidance pathways.
  Journal
J Cell Physiol 191:28-41 (2002)
DOI:10.1002/jcp.10077
Reference
  Authors
Ikejima M, Shimada T.
  Title
[Molecular mechanism of mismatch repair]
  Journal
Tanpakushitsu Kakusan Koso 46:1124-9 (2001)
KO pathway
ko03430   
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