KEGG   PATHWAY: pby00020
Entry
pby00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Segatella bryantii
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pby00020  Citrate cycle (TCA cycle)
pby00020

Module
pby_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pby00020]
pby_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pby00020]
Other DBs
GO: 0006099
Organism
Segatella bryantii [GN:pby]
Gene
L6471_10165  citrate/2-methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
L6471_10170  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
L6471_05615  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
L6471_01545  3-methyl-2-oxobutanoate dehydrogenase subunit VorB [KO:K00174] [EC:1.2.7.3 1.2.7.11]
L6471_01540  thiamine pyrophosphate-dependent enzyme [KO:K00175] [EC:1.2.7.3 1.2.7.11]
L6471_01535  2-oxoacid:acceptor oxidoreductase family protein [KO:K00177] [EC:1.2.7.3]
L6471_01550  4Fe-4S binding protein [KO:K00176] [EC:1.2.7.3]
L6471_14035  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
L6471_14030  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
L6471_14040  succinate dehydrogenase/fumarate reductase cytochrome b subunit [KO:K00241]
L6471_12385  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
L6471_13115  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
L6471_11050  oxaloacetate decarboxylase [KO:K01960] [EC:6.4.1.1]
L6471_04535  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
L6471_07685  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pby00010  Glycolysis / Gluconeogenesis
pby00053  Ascorbate and aldarate metabolism
pby00061  Fatty acid biosynthesis
pby00190  Oxidative phosphorylation
pby00220  Arginine biosynthesis
pby00250  Alanine, aspartate and glutamate metabolism
pby00280  Valine, leucine and isoleucine degradation
pby00350  Tyrosine metabolism
pby00470  D-Amino acid metabolism
pby00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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