KEGG   PATHWAY: pci00630
Entry
pci00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Pseudomonas cichorii
Class
Metabolism; Carbohydrate metabolism
Pathway map
pci00630  Glyoxylate and dicarboxylate metabolism
pci00630

Module
pci_M00621  Glycine cleavage system [PATH:pci00630]
Other DBs
GO: 0046487 0043648
Organism
Pseudomonas cichorii [GN:pci]
Gene
PCH70_18260  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
PCH70_13460  acetyl-CoA synthetase [KO:K01895] [EC:6.2.1.1]
PCH70_07980  acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
PCH70_47500  malate synthase G [KO:K01638] [EC:2.3.3.9]
PCH70_32280  malate synthase G [KO:K01638] [EC:2.3.3.9]
PCH70_30780  type II citrate synthase [KO:K01647] [EC:2.3.3.1]
PCH70_14280  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
PCH70_16740  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
PCH70_15310  aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
PCH70_24570  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
PCH70_46350  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
PCH70_07960  phbA1 protein [KO:K00626] [EC:2.3.1.9]
PCH70_39110  maoC-like domain-containing protein [KO:K17865] [EC:4.2.1.55]
PCH70_40110  biotin carboxylase/biotin carboxyl carrier protein [KO:K11263] [EC:6.4.1.2 6.4.1.3 6.3.4.14]
PCH70_32240  glycolate oxidase subunit GlcD [KO:K00104] [EC:1.1.99.14]
PCH70_32250  glycolate oxidase FAD binding subunit [KO:K11472] [EC:1.1.99.14]
PCH70_32260  glycolate oxidase iron-sulfur subunit [KO:K11473] [EC:1.1.99.14]
PCH70_45500  catalase [KO:K03781] [EC:1.11.1.6]
PCH70_32530  catalase [KO:K03781] [EC:1.11.1.6]
PCH70_00470  hydroperoxidase II [KO:K03781] [EC:1.11.1.6]
PCH70_02770  D-3-phosphoglycerate dehydrogenase [KO:K12972] [EC:1.1.1.79 1.1.1.81]
PCH70_09770  D-isomer specific 2-hydroxyacid dehydrogenase family protein [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
PCH70_09280  glycerate dehydrogenase [KO:K00018] [EC:1.1.1.29]
PCH70_34710  haloacid dehalogenase-like hydrolase [KO:K01091] [EC:3.1.3.18]
PCH70_06300  gph protein [KO:K01091] [EC:3.1.3.18]
PCH70_00700  HAD hydrolase [KO:K01091] [EC:3.1.3.18]
PCH70_19110  haloacid dehalogenase domain protein hydrolase [KO:K01091] [EC:3.1.3.18]
PCH70_33860  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
PCH70_03630  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
PCH70_23240  glutamine synthetase, type III [KO:K01915] [EC:6.3.1.2]
PCH70_49180  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
PCH70_49200  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
PCH70_04570  GlyA protein [KO:K00600] [EC:2.1.2.1]
PCH70_43970  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
PCH70_10460  glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
PCH70_02660  GcvT protein [KO:K00605] [EC:2.1.2.10]
PCH70_10450  glycine cleavage system T protein [KO:K00605] [EC:2.1.2.10]
PCH70_30700  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
PCH70_02670  glycine cleavage system protein H [KO:K02437]
PCH70_10470  glycine cleavage system protein H [KO:K02437]
PCH70_26750  hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
PCH70_19780  glycerate kinase [KO:K00865] [EC:2.7.1.165]
PCH70_08330  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
PCH70_07280  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
PCH70_10710  keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
PCH70_04620  formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
PCH70_23220  formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
PCH70_41300  formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
PCH70_48900  N-formylglutamate deformylase [KO:K01458] [EC:3.5.1.68]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
pci00010  Glycolysis / Gluconeogenesis
pci00020  Citrate cycle (TCA cycle)
pci00030  Pentose phosphate pathway
pci00053  Ascorbate and aldarate metabolism
pci00071  Fatty acid degradation
pci00230  Purine metabolism
pci00250  Alanine, aspartate and glutamate metabolism
pci00260  Glycine, serine and threonine metabolism
pci00620  Pyruvate metabolism
pci00710  Carbon fixation by Calvin cycle
pci00750  Vitamin B6 metabolism
pci00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

DBGET integrated database retrieval system