KEGG   PATHWAY: pcj00630
Entry
pcj00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Paraburkholderia caledonica
Class
Metabolism; Carbohydrate metabolism
Pathway map
pcj00630  Glyoxylate and dicarboxylate metabolism
pcj00630

Module
pcj_M00012  Glyoxylate cycle [PATH:pcj00630]
pcj_M00621  Glycine cleavage system [PATH:pcj00630]
Other DBs
GO: 0046487 0043648
Organism
Paraburkholderia caledonica [GN:pcj]
Gene
CUJ87_06150  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
CUJ87_22940  AMP-dependent synthetase [KO:K01895] [EC:6.2.1.1]
CUJ87_24745  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
CUJ87_10610  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
CUJ87_08050  malate synthase G [KO:K01638] [EC:2.3.3.9]
CUJ87_06130  malate synthase A [KO:K01638] [EC:2.3.3.9]
CUJ87_27430  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
CUJ87_27395  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
CUJ87_13720  citrate synthase [KO:K01647] [EC:2.3.3.1]
CUJ87_27455  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
CUJ87_03010  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
CUJ87_07825  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
CUJ87_01030  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
CUJ87_07505  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
CUJ87_07530  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
CUJ87_09575  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
CUJ87_07510  beta-ketoacyl-ACP reductase [KO:K00023] [EC:1.1.1.36]
CUJ87_25265  dehydratase [KO:K17865] [EC:4.2.1.55]
CUJ87_02245  FAD-binding oxidoreductase [KO:K00104] [EC:1.1.99.14]
CUJ87_02240  glycolate oxidase subunit GlcE [KO:K11472] [EC:1.1.99.14]
CUJ87_02235  glycolate oxidase iron-sulfur subunit [KO:K11473] [EC:1.1.99.14]
CUJ87_18680  catalase [KO:K03781] [EC:1.11.1.6]
CUJ87_20015  catalase [KO:K03781] [EC:1.11.1.6]
CUJ87_02210  catalase [KO:K03781] [EC:1.11.1.6]
CUJ87_29940  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
CUJ87_09030  bifunctional glyoxylate/hydroxypyruvate reductase B [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
CUJ87_12520  D-glycerate dehydrogenase [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
CUJ87_15240  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
CUJ87_12480  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
CUJ87_23620  gph; phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
CUJ87_23500  rbcL; ribulose-bisphosphate carboxylase large subunit [KO:K01601] [EC:4.1.1.39]
CUJ87_23495  ribulose bisphosphate carboxylase small subunit [KO:K01602] [EC:4.1.1.39]
CUJ87_02570  alanine--glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
CUJ87_27865  aminotransferase class V-fold PLP-dependent enzyme [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
CUJ87_08390  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
CUJ87_29365  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
CUJ87_05500  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
CUJ87_20305  glyA; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
CUJ87_02450  glyA; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
CUJ87_16850  gcvP; glycine dehydrogenase (aminomethyl-transferring) [KO:K00281] [EC:1.4.4.2]
CUJ87_16840  gcvT; glycine cleavage system protein T [KO:K00605] [EC:2.1.2.10]
CUJ87_05580  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CUJ87_09650  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CUJ87_32560  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CUJ87_16845  gcvH; glycine cleavage system protein H [KO:K02437]
CUJ87_07195  gcl; glyoxylate carboligase [KO:K01608] [EC:4.1.1.47]
CUJ87_07190  hyi; hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
CUJ87_19445  2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
CUJ87_03090  2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
CUJ87_07710  glycerate kinase [KO:K00865] [EC:2.7.1.165]
CUJ87_32385  glycerate kinase [KO:K11529] [EC:2.7.1.165]
CUJ87_08100  aldehyde dehydrogenase [KO:K07248] [EC:1.2.1.22 1.2.1.21]
CUJ87_25010  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
CUJ87_29920  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
CUJ87_32390  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
CUJ87_14610  2-dehydro-3-deoxyphosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
CUJ87_12960  formate dehydrogenase [KO:K00126] [EC:1.17.1.9]
CUJ87_12955  formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
CUJ87_12950  formate dehydrogenase [KO:K00124]
CUJ87_12945  formate dehydrogenase [KO:K00127]
CUJ87_13930  kynB; arylformamidase [KO:K07130] [EC:3.5.1.9]
CUJ87_01705  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
CUJ87_20355  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
CUJ87_10125  hutG; N-formylglutamate deformylase [KO:K01458] [EC:3.5.1.68]
CUJ87_30150  frc; formyl-CoA transferase [KO:K07749] [EC:2.8.3.16]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
pcj00010  Glycolysis / Gluconeogenesis
pcj00020  Citrate cycle (TCA cycle)
pcj00030  Pentose phosphate pathway
pcj00053  Ascorbate and aldarate metabolism
pcj00071  Fatty acid degradation
pcj00230  Purine metabolism
pcj00250  Alanine, aspartate and glutamate metabolism
pcj00260  Glycine, serine and threonine metabolism
pcj00620  Pyruvate metabolism
pcj00710  Carbon fixation by Calvin cycle
pcj00750  Vitamin B6 metabolism
pcj00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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