KEGG   PATHWAY: pclr00020
Entry
pclr00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Paraprevotella clara
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pclr00020  Citrate cycle (TCA cycle)
pclr00020

Module
pclr_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pclr00020]
Other DBs
GO: 0006099
Organism
Paraprevotella clara [GN:pclr]
Gene
PC1C4_04880  MFS transporter [KO:K00174] [EC:1.2.7.3 1.2.7.11]
PC1C4_24010  3-methyl-2-oxobutanoate dehydrogenase subunit VorB [KO:K00174] [EC:1.2.7.3 1.2.7.11]
PC1C4_04870  2-oxoglutarate ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
PC1C4_24030  2-oxoglutarate oxidoreductase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
PC1C4_24040  2-oxoglutarate ferredoxin oxidoreductase subunit gamma [KO:K00177] [EC:1.2.7.3]
PC1C4_24000  ferredoxin [KO:K00176] [EC:1.2.7.3]
PC1C4_07370  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
PC1C4_07380  succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
PC1C4_07360  fumarate reductase [KO:K00241]
PC1C4_10150  fumarate hydratase class I [KO:K01676] [EC:4.2.1.2]
PC1C4_02770  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
PC1C4_00070  pyruvate carboxylase subunit B [KO:K01960] [EC:6.4.1.1]
PC1C4_04850  pckA; phosphoenolpyruvate carboxykinase [ATP] [KO:K01610] [EC:4.1.1.49]
PC1C4_12770  pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pclr00010  Glycolysis / Gluconeogenesis
pclr00053  Ascorbate and aldarate metabolism
pclr00061  Fatty acid biosynthesis
pclr00071  Fatty acid degradation
pclr00190  Oxidative phosphorylation
pclr00220  Arginine biosynthesis
pclr00250  Alanine, aspartate and glutamate metabolism
pclr00280  Valine, leucine and isoleucine degradation
pclr00350  Tyrosine metabolism
pclr00470  D-Amino acid metabolism
pclr00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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