KEGG   PATHWAY: pcy03008
Entry
pcy03008                    Pathway                                
Name
Ribosome biogenesis in eukaryotes - Plasmodium cynomolgi
Description
Ribosomes are the cellular factories responsible for making proteins. In eukaryotes, ribosome biogenesis involves the production and correct assembly of four rRNAs and about 80 ribosomal proteins. It requires hundreds of factors not present in the mature particle. In the absence of these proteins, ribosome biogenesis is stalled and cell growth is terminated even under optimal growth conditions. The primary pre-rRNA transcript is assembled into the 90S pre-ribosome, which contains both 40S and 60S assembly factors. Within this complex, the pre-rRNA is cleaved. pre-60S ribosomes are subjected to several sequential processing steps in the nucleoplasm involving numerous assembly intermediates before it is exported to the cytoplasm and matured into the 60S ribosomal subunit. The pre-40S ribosome is matured to the small ribosomal subunit in the cytoplasm by cleavage.
Class
Genetic Information Processing; Translation
Pathway map
pcy03008  Ribosome biogenesis in eukaryotes
pcy03008

Organism
Plasmodium cynomolgi [GN:pcy]
Gene
PCYB_091080  casein kinase II beta chain [KO:K03115]
PCYB_122120  casein kinase II beta chain [KO:K03115]
PCYB_091530  casein kinase II alpha subunit [KO:K03097] [EC:2.7.11.1]
PCYB_112840  hypothetical protein [KO:K14545]
PCYB_145010  hypothetical protein [KO:K14553]
PCYB_126710  WD domain G-beta repeat domain containing protein [KO:K14556]
PCYB_012470  WD-repeat protein p103 [KO:K14558]
PCYB_062120  U3 small nucleolar ribonucleoprotein protein MPP10 [KO:K14559]
PCYB_125380  U3 small nucleolar ribonucleoprotein protein IMP3 [KO:K14560]
PCYB_052230  U3 small nucleolar ribonucleoprotein protein [KO:K14561]
PCYB_134930  fibrillarin [KO:K14563] [EC:2.1.1.-]
PCYB_092460  nucleolar protein NOP56 [KO:K14564]
PCYB_081810  nucleolar protein NOP5 [KO:K14565]
PCYB_092990  ribosomal protein L7A [KO:K12845]
PCYB_133920  tRNA pseudouridine synthase [KO:K11131] [EC:5.4.99.-]
PCYB_053410  ribosomal protein L7Ae-related protein [KO:K11129]
PCYB_141900  snoRNP protein GAR1 [KO:K11128]
PCYB_132585  ribosome biogenesis protein Nop10 [KO:K11130]
PCYB_052330  hypothetical protein [KO:K14566]
PCYB_012390  hypothetical protein [KO:K14567]
PCYB_051970  ribosome biogenesis protein NEP1 [KO:K14568] [EC:2.1.1.260]
PCYB_021730  ribosome biogenesis protein BMS1 [KO:K14569]
PCYB_061500  ATPase [KO:K14521] [EC:2.3.1.-]
PCYB_124400  RNA 3'-terminal phosphate cyclase-like protein [KO:K11108]
PCYB_011670  POP1-like nucleolar ribonuclease [KO:K01164] [EC:3.1.26.5]
PCYB_113010  hypothetical protein [KO:K03538] [EC:3.1.26.5]
PCYB_091800  hypothetical protein [KO:K14530] [EC:3.1.26.5]
PCYB_071720  exoribonuclease [KO:K12619] [EC:3.1.13.-]
PCYB_114410  nucleolar GTP-binding protein 1 [KO:K06943]
PCYB_133430  GTPase [KO:K14537]
PCYB_143390  AAA family ATPase [KO:K14571]
PCYB_132440  P-loop containing nucleoside triphospahte hydrolase [KO:K14572]
PCYB_135060  hypothetical protein [KO:K14573]
PCYB_053300  hypothetical protein [KO:K11883]
PCYB_092380  GTP-binding nuclear protein Ran [KO:K07936]
PCYB_084630  exportin 1 [KO:K14290]
PCYB_022420  mRNA decay protein [KO:K07562]
PCYB_122990  eukaryotic translation initiation factor 6 [KO:K03264]
PCYB_134580  hypothetical protein [KO:K14574]
PCYB_132740  GTPase [KO:K14539] [EC:3.6.1.-]
PCYB_021350  hemoglobin and proliferation regulated protein HBR1 [KO:K18532] [EC:2.7.4.3]
PCYB_145650  protease [KO:K07178] [EC:2.7.11.1]
PCYB_053440  ROI kinase-like protein [KO:K07179] [EC:2.7.11.1]
Reference
  Authors
Freed EF, Bleichert F, Dutca LM, Baserga SJ
  Title
When ribosomes go bad: diseases of ribosome biogenesis.
  Journal
Mol Biosyst 6:481-93 (2010)
DOI:10.1039/b919670f
Reference
  Authors
Perez-Fernandez J, Roman A, De Las Rivas J, Bustelo XR, Dosil M
  Title
The 90S preribosome is a multimodular structure that is assembled through a hierarchical mechanism.
  Journal
Mol Cell Biol 27:5414-29 (2007)
DOI:10.1128/MCB.00380-07
Reference
  Authors
Strunk BS, Karbstein K
  Title
Powering through ribosome assembly.
  Journal
RNA 15:2083-104 (2009)
DOI:10.1261/rna.1792109
Reference
  Authors
Granneman S, Baserga SJ
  Title
Ribosome biogenesis: of knobs and RNA processing.
  Journal
Exp Cell Res 296:43-50 (2004)
DOI:10.1016/j.yexcr.2004.03.016
Reference
  Authors
Kressler D, Hurt E, Bassler J
  Title
Driving ribosome assembly.
  Journal
Biochim Biophys Acta 1803:673-83 (2010)
DOI:10.1016/j.bbamcr.2009.10.009
Related
pathway
pcy03010  Ribosome
KO pathway
ko03008   
LinkDB

DBGET integrated database retrieval system