KEGG   PATHWAY: pdh00630
Entry
pdh00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Paenibacillus donghaensis
Class
Metabolism; Carbohydrate metabolism
Pathway map
pdh00630  Glyoxylate and dicarboxylate metabolism
pdh00630

Module
pdh_M00621  Glycine cleavage system [PATH:pdh00630]
Other DBs
GO: 0046487 0043648
Organism
Paenibacillus donghaensis [GN:pdh]
Gene
B9T62_37110  acyl--CoA ligase [KO:K01895] [EC:6.2.1.1]
B9T62_05545  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
B9T62_05535  citrate synthase [KO:K01647] [EC:2.3.3.1]
B9T62_35325  acnA; aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
B9T62_11905  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
B9T62_03635  haloacid dehalogenase [KO:K01091] [EC:3.1.3.18]
B9T62_05040  haloacid dehalogenase [KO:K01091] [EC:3.1.3.18]
B9T62_14745  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
B9T62_04210  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
B9T62_29570  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
B9T62_29060  glycine dehydrogenase (aminomethyl-transferring) [KO:K00282] [EC:1.4.4.2]
B9T62_29065  glycine dehydrogenase (aminomethyl-transferring) [KO:K00283] [EC:1.4.4.2]
B9T62_29055  gcvT; glycine cleavage system protein T [KO:K00605] [EC:2.1.2.10]
B9T62_21090  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
B9T62_14505  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
B9T62_29050  gcvH; glycine cleavage system protein H [KO:K02437]
B9T62_22500  glycerate 2-kinase [KO:K00865] [EC:2.7.1.165]
B9T62_22255  aldehyde dehydrogenase [KO:K07248] [EC:1.2.1.22 1.2.1.21]
B9T62_24380  bifunctional 2-keto-4-hydroxyglutarate aldolase/2-keto-3-deoxy-6-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
B9T62_27835  oxalate decarboxylase [KO:K01569] [EC:4.1.1.2]
B9T62_12740  hypothetical protein [KO:K07130] [EC:3.5.1.9]
B9T62_01220  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
pdh00010  Glycolysis / Gluconeogenesis
pdh00020  Citrate cycle (TCA cycle)
pdh00030  Pentose phosphate pathway
pdh00053  Ascorbate and aldarate metabolism
pdh00071  Fatty acid degradation
pdh00230  Purine metabolism
pdh00250  Alanine, aspartate and glutamate metabolism
pdh00260  Glycine, serine and threonine metabolism
pdh00620  Pyruvate metabolism
pdh00710  Carbon fixation by Calvin cycle
pdh00750  Vitamin B6 metabolism
pdh00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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