KEGG   PATHWAY: pfaa00020
Entry
pfaa00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Pusillibacter faecalis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pfaa00020  Citrate cycle (TCA cycle)
pfaa00020

Module
pfaa_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pfaa00020]
pfaa_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pfaa00020]
Other DBs
GO: 0006099
Organism
Pusillibacter faecalis [GN:pfaa]
Gene
MM59RIKEN_19580  citrate synthase [KO:K01647] [EC:2.3.3.1]
MM59RIKEN_34450  hydratase [KO:K01681] [EC:4.2.1.3]
MM59RIKEN_34460  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
MM59RIKEN_04730  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
MM59RIKEN_15270  acoL_1; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
MM59RIKEN_27910  acoL_2; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
MM59RIKEN_03880  3-methyl-2-oxobutanoate dehydrogenase subunit VorB [KO:K00174] [EC:1.2.7.3 1.2.7.11]
MM59RIKEN_17720  3-methyl-2-oxobutanoate dehydrogenase subunit VorB [KO:K00174] [EC:1.2.7.3 1.2.7.11]
MM59RIKEN_18340  3-methyl-2-oxobutanoate dehydrogenase subunit VorB [KO:K00174] [EC:1.2.7.3 1.2.7.11]
MM59RIKEN_19230  3-methyl-2-oxobutanoate dehydrogenase subunit VorB [KO:K00174] [EC:1.2.7.3 1.2.7.11]
MM59RIKEN_03870  MFS transporter [KO:K00175] [EC:1.2.7.3 1.2.7.11]
MM59RIKEN_17710  MFS transporter [KO:K00175] [EC:1.2.7.3 1.2.7.11]
MM59RIKEN_18330  MFS transporter [KO:K00175] [EC:1.2.7.3 1.2.7.11]
MM59RIKEN_19240  2-oxoglutarate oxidoreductase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
MM59RIKEN_03860  2-oxoglutarate ferredoxin oxidoreductase subunit gamma [KO:K00177] [EC:1.2.7.3]
MM59RIKEN_17700  2-oxoglutarate ferredoxin oxidoreductase subunit gamma [KO:K00177] [EC:1.2.7.3]
MM59RIKEN_18320  2-oxoacid:ferredoxin oxidoreductase subunit gamma [KO:K00177] [EC:1.2.7.3]
MM59RIKEN_19250  oxidoreductase [KO:K00177] [EC:1.2.7.3]
MM59RIKEN_03890  2-oxoacid:acceptor oxidoreductase subunit delta [KO:K00176] [EC:1.2.7.3]
MM59RIKEN_17730  2-oxoacid:acceptor oxidoreductase subunit delta [KO:K00176] [EC:1.2.7.3]
MM59RIKEN_18350  tungsten formylmethanofuran dehydrogenase subunit G [KO:K00176] [EC:1.2.7.3]
MM59RIKEN_19220  tungsten formylmethanofuran dehydrogenase subunit G [KO:K00176] [EC:1.2.7.3]
MM59RIKEN_13100  oxidoreductase [KO:K00239] [EC:1.3.5.1]
MM59RIKEN_06700  fumC; fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
MM59RIKEN_21490  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
MM59RIKEN_30410  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
MM59RIKEN_00330  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
MM59RIKEN_15250  acoB_1; TPP-dependent acetoin dehydrogenase complex, E1 protein subunit beta [KO:K00162] [EC:1.2.4.1]
MM59RIKEN_15260  acoC; dihydrolipoyllysine-residue acetyltransferase component of acetoin cleaving system [KO:K00627] [EC:2.3.1.12]
MM59RIKEN_27920  pdhC; dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
MM59RIKEN_21470  pyruvate ferredoxin oxidoreductase subunit alpha [KO:K00169] [EC:1.2.7.1]
MM59RIKEN_27520  pyruvate ferredoxin oxidoreductase subunit alpha [KO:K00169] [EC:1.2.7.1]
MM59RIKEN_21480  2-ketoisovalerate ferredoxin oxidoreductase [KO:K00170] [EC:1.2.7.1]
MM59RIKEN_27510  pyruvate ferredoxin oxidoreductase subunit beta [KO:K00170] [EC:1.2.7.1]
MM59RIKEN_15750  pyruvate/ketoisovalerate ferredoxin oxidoreductase subunit gamma [KO:K00172] [EC:1.2.7.1]
MM59RIKEN_21460  pyruvate ferredoxin oxidoreductase subunit gamma/delta [KO:K00172] [EC:1.2.7.1]
MM59RIKEN_27540  pyruvate ferredoxin oxidoreductase subunit gamma [KO:K00172] [EC:1.2.7.1]
MM59RIKEN_27530  porD; pyruvate ferredoxin oxidoreductase subunit delta [KO:K00171] [EC:1.2.7.1]
MM59RIKEN_17250  pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
MM59RIKEN_21570  nifJ2_1; pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
MM59RIKEN_27800  nifJ2_2; pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pfaa00010  Glycolysis / Gluconeogenesis
pfaa00053  Ascorbate and aldarate metabolism
pfaa00061  Fatty acid biosynthesis
pfaa00071  Fatty acid degradation
pfaa00190  Oxidative phosphorylation
pfaa00220  Arginine biosynthesis
pfaa00250  Alanine, aspartate and glutamate metabolism
pfaa00280  Valine, leucine and isoleucine degradation
pfaa00350  Tyrosine metabolism
pfaa00470  D-Amino acid metabolism
pfaa00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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