KEGG   PATHWAY: phom03030
Entry
phom03030                   Pathway                                
Name
DNA replication - Pseudomonas hormoni
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
phom03030  DNA replication
phom03030

Organism
Pseudomonas hormoni [GN:phom]
Gene
KJF94_12350  dnaQ; DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
KJF94_22770  3'-5' exonuclease [KO:K02342] [EC:2.7.7.7]
KJF94_24115  3'-5' exonuclease [KO:K02342] [EC:2.7.7.7]
KJF94_02635  dnaE; DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
KJF94_06075  dnaX; DNA polymerase III subunit gamma/tau [KO:K02343] [EC:2.7.7.7]
KJF94_18250  DNA polymerase III subunit delta' [KO:K02341] [EC:2.7.7.7]
KJF94_22945  DNA polymerase III subunit delta [KO:K02340] [EC:2.7.7.7]
KJF94_21115  DNA polymerase III subunit chi [KO:K02339] [EC:2.7.7.7]
KJF94_26575  dnaN; DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
KJF94_29335  dnaB; replicative DNA helicase [KO:K02314] [EC:5.6.2.3]
KJF94_23925  dnaG; DNA primase [KO:K02316] [EC:2.7.7.101]
KJF94_23400  single-stranded DNA-binding protein [KO:K03111]
KJF94_07055  ssb; single-stranded DNA-binding protein [KO:K03111]
KJF94_12355  rnhA; ribonuclease HI [KO:K03469] [EC:3.1.26.4]
KJF94_02630  rnhB; ribonuclease HII [KO:K03470] [EC:3.1.26.4]
KJF94_26840  polA; DNA polymerase I [KO:K02335] [EC:2.7.7.7]
KJF94_24485  ligB; NAD-dependent DNA ligase LigB [KO:K01972] [EC:6.5.1.2]
KJF94_06045  ligA; NAD-dependent DNA ligase LigA [KO:K01972] [EC:6.5.1.2]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   
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