KEGG   PATHWAY: pis00020
Entry
pis00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Pyrobaculum islandicum
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pis00020  Citrate cycle (TCA cycle)
pis00020

Module
pis_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:pis00020]
pis_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pis00020]
pis_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:pis00020]
pis_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pis00020]
Other DBs
GO: 0006099
Organism
Pyrobaculum islandicum [GN:pis]
Gene
Pisl_1692  citrate synthase [KO:K01647] [EC:2.3.3.1]
Pisl_1583  aconitase [KO:K01681] [EC:4.2.1.3]
Pisl_1672  isocitrate dehydrogenase (NADP) [KO:K00031] [EC:1.1.1.42]
Pisl_1175  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Pisl_1174  pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Pisl_1027  succinyl-CoA synthetase (ADP-forming) alpha subunit [KO:K01902] [EC:6.2.1.5]
Pisl_1026  succinyl-CoA synthetase (ADP-forming) beta subunit [KO:K01903] [EC:6.2.1.5]
Pisl_0671  succinate dehydrogenase subunit A [KO:K00239] [EC:1.3.5.1]
Pisl_0247  succinate dehydrogenase subunit A [KO:K00239] [EC:1.3.5.1]
Pisl_0670  succinate dehydrogenase subunit B [KO:K00240] [EC:1.3.5.1]
Pisl_0246  ferredoxin [KO:K00240] [EC:1.3.5.1]
Pisl_0669  succinate dehydrogenase subunit C [KO:K00241]
Pisl_0668  succinate dehydrogenase subunit D [KO:K18860]
Pisl_0950  fumarase alpha subunit [KO:K01677] [EC:4.2.1.2]
Pisl_0951  fumarase beta subunit [KO:K01678] [EC:4.2.1.2]
Pisl_0612  malate dehydrogenase (NAD) [KO:K00024] [EC:1.1.1.37]
Pisl_0325  pyruvate ferredoxin oxidoreductase, alpha subunit [KO:K00169] [EC:1.2.7.1]
Pisl_0499  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00169] [EC:1.2.7.1]
Pisl_1232  pyruvate ferredoxin oxidoreductase, alpha subunit [KO:K00169] [EC:1.2.7.1]
Pisl_0500  thiamine pyrophosphate enzyme domain protein TPP-binding protein [KO:K00170] [EC:1.2.7.1]
Pisl_0326  pyruvate ferredoxin oxidoreductase, beta subunit [KO:K00170] [EC:1.2.7.1]
Pisl_1233  thiamine pyrophosphate enzyme domain protein TPP-binding protein [KO:K00170] [EC:1.2.7.1]
Pisl_1230  pyruvate/ketoisovalerate oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
Pisl_0324  pyruvate ferredoxin oxidoreductase, gamma subunit / pyruvate ferredoxin oxidoreductase, delta subunit [KO:K00172] [EC:1.2.7.1]
Pisl_0497  pyruvate/ketoisovalerate oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
Pisl_0498  pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [KO:K00171] [EC:1.2.7.1]
Pisl_1231  pyruvate ferredoxin oxidoreductase, delta subunit [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pis00010  Glycolysis / Gluconeogenesis
pis00061  Fatty acid biosynthesis
pis00071  Fatty acid degradation
pis00190  Oxidative phosphorylation
pis00220  Arginine biosynthesis
pis00250  Alanine, aspartate and glutamate metabolism
pis00280  Valine, leucine and isoleucine degradation
pis00350  Tyrosine metabolism
pis00470  D-Amino acid metabolism
pis00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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