KEGG   PATHWAY: plen00020
Entry
plen00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Paenibacillus lentus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
plen00020  Citrate cycle (TCA cycle)
plen00020

Module
plen_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:plen00020]
plen_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:plen00020]
plen_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:plen00020]
plen_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:plen00020]
Other DBs
GO: 0006099
Organism
Paenibacillus lentus [GN:plen]
Gene
EIM92_19570  citrate synthase [KO:K01647] [EC:2.3.3.1]
EIM92_00270  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
EIM92_19565  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
EIM92_15570  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
EIM92_13715  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
EIM92_17445  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
EIM92_17440  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
EIM92_17910  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
EIM92_17915  ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
EIM92_08970  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
EIM92_08975  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
EIM92_08965  succinate dehydrogenase [KO:K00241]
EIM92_19530  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
EIM92_19560  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
EIM92_05250  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
EIM92_15555  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
EIM92_15560  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
EIM92_15565  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
EIM92_17375  pyruvate synthase [KO:K00169] [EC:1.2.7.1]
EIM92_17380  4Fe-4S dicluster domain-containing protein [KO:K00172] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
plen00010  Glycolysis / Gluconeogenesis
plen00053  Ascorbate and aldarate metabolism
plen00061  Fatty acid biosynthesis
plen00071  Fatty acid degradation
plen00190  Oxidative phosphorylation
plen00220  Arginine biosynthesis
plen00250  Alanine, aspartate and glutamate metabolism
plen00280  Valine, leucine and isoleucine degradation
plen00350  Tyrosine metabolism
plen00470  D-Amino acid metabolism
plen00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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