KEGG   PATHWAY: pmas00630
Entry
pmas00630                   Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Pelagerythrobacter marinus
Class
Metabolism; Carbohydrate metabolism
Pathway map
pmas00630  Glyoxylate and dicarboxylate metabolism
pmas00630

Module
pmas_M00012  Glyoxylate cycle [PATH:pmas00630]
pmas_M00621  Glycine cleavage system [PATH:pmas00630]
pmas_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:pmas00630]
Other DBs
GO: 0046487 0043648
Organism
Pelagerythrobacter marinus [GN:pmas]
Gene
NCF86_06090  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
NCF86_05265  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
NCF86_09805  malate synthase G [KO:K01638] [EC:2.3.3.9]
NCF86_07295  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
NCF86_15240  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
NCF86_07970  citrate synthase [KO:K01647] [EC:2.3.3.1]
NCF86_14960  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
NCF86_16985  thiolase family protein [KO:K00626] [EC:2.3.1.9]
NCF86_01950  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
NCF86_08100  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
NCF86_09075  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
NCF86_10105  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
NCF86_13710  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
NCF86_14195  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
NCF86_14385  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
NCF86_14770  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
NCF86_14380  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
NCF86_13375  phbB; acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
NCF86_05950  mce; methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
NCF86_05920  acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha [KO:K01965] [EC:6.4.1.3]
NCF86_05960  acyl-CoA carboxylase subunit beta [KO:K01966] [EC:6.4.1.3 2.1.3.15]
NCF86_16685  scpA; methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
NCF86_05940  scpA; methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
NCF86_09595  catalase [KO:K03781] [EC:1.11.1.6]
NCF86_08115  D-glycerate dehydrogenase [KO:K00015] [EC:1.1.1.26]
NCF86_01860  HAD-IA family hydrolase [KO:K01091] [EC:3.1.3.18]
NCF86_02395  HAD hydrolase-like protein [KO:K01091] [EC:3.1.3.18]
NCF86_02115  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
NCF86_05080  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
NCF86_16750  gcvP; aminomethyl-transferring glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
NCF86_14240  gcvPA; aminomethyl-transferring glycine dehydrogenase subunit GcvPA [KO:K00282] [EC:1.4.4.2]
NCF86_14245  gcvPB; aminomethyl-transferring glycine dehydrogenase subunit GcvPB [KO:K00283] [EC:1.4.4.2]
NCF86_16740  gcvT; glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
NCF86_14230  gcvT; glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
NCF86_05585  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
NCF86_07325  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
NCF86_16745  gcvH; glycine cleavage system protein GcvH [KO:K02437]
NCF86_14235  gcvH; glycine cleavage system protein GcvH [KO:K02437]
NCF86_15750  garR; 2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
NCF86_15755  garK; glycerate 2-kinase [KO:K00865] [EC:2.7.1.165]
NCF86_16965  glycerate kinase [KO:K00865] [EC:2.7.1.165]
NCF86_01390  eda; bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
NCF86_10795  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
pmas00010  Glycolysis / Gluconeogenesis
pmas00020  Citrate cycle (TCA cycle)
pmas00030  Pentose phosphate pathway
pmas00053  Ascorbate and aldarate metabolism
pmas00071  Fatty acid degradation
pmas00230  Purine metabolism
pmas00250  Alanine, aspartate and glutamate metabolism
pmas00260  Glycine, serine and threonine metabolism
pmas00620  Pyruvate metabolism
pmas00710  Carbon fixation by Calvin cycle
pmas00750  Vitamin B6 metabolism
pmas00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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