KEGG   PATHWAY: pna00630
Entry
pna00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Polaromonas naphthalenivorans
Class
Metabolism; Carbohydrate metabolism
Pathway map
pna00630  Glyoxylate and dicarboxylate metabolism
pna00630

Module
pna_M00012  Glyoxylate cycle [PATH:pna00630]
pna_M00621  Glycine cleavage system [PATH:pna00630]
Other DBs
GO: 0046487 0043648
Organism
Polaromonas naphthalenivorans [GN:pna]
Gene
Pnap_2855  isocitrate lyase [KO:K01637] [EC:4.1.3.1 4.1.3.30]
Pnap_2880  acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
Pnap_3683  malate synthase G [KO:K01638] [EC:2.3.3.9]
Pnap_3030  malate dehydrogenase (NAD) [KO:K00024] [EC:1.1.1.37]
Pnap_3037  citrate synthase [KO:K01647] [EC:2.3.3.1]
Pnap_0845  Citrate synthase [KO:K01647] [EC:2.3.3.1]
Pnap_3024  aconitase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
Pnap_3027  aconitase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
Pnap_1159  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
Pnap_2804  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
Pnap_0060  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
Pnap_0458  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
Pnap_1843  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
Pnap_0797  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
Pnap_2803  acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
Pnap_3284  MaoC domain protein dehydratase [KO:K17865] [EC:4.2.1.55]
Pnap_2379  acetyl-CoA carboxylase, biotin carboxylase [KO:K01965] [EC:6.4.1.3]
Pnap_2381  propionyl-CoA carboxylase carboxyltransferase subunit [KO:K01966] [EC:6.4.1.3 2.1.3.15]
Pnap_2383  methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
Pnap_0293  FAD linked oxidase domain protein [KO:K00104] [EC:1.1.99.14]
Pnap_0123  FAD linked oxidase domain protein [KO:K11472] [EC:1.1.99.14]
Pnap_0125  protein of unknown function DUF224, cysteine-rich region domain protein [KO:K11473] [EC:1.1.99.14]
Pnap_2662  Catalase [KO:K03781] [EC:1.11.1.6]
Pnap_1993  Catalase [KO:K03781] [EC:1.11.1.6]
Pnap_1830  Catalase [KO:K03781] [EC:1.11.1.6]
Pnap_0476  D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding protein [KO:K12972] [EC:1.1.1.79 1.1.1.81]
Pnap_1622  D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding protein [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
Pnap_3656  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
Pnap_1985  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
Pnap_3084  HAD-superfamily hydrolase, subfamily IA, variant 1 [KO:K01091] [EC:3.1.3.18]
Pnap_2974  Haloacid dehalogenase domain protein hydrolase [KO:K01091] [EC:3.1.3.18]
Pnap_1978  ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [KO:K01601] [EC:4.1.1.39]
Pnap_2780  L-glutamine synthetase [KO:K01915] [EC:6.3.1.2]
Pnap_2864  L-glutamine synthetase [KO:K01915] [EC:6.3.1.2]
Pnap_2907  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
Pnap_2685  glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
Pnap_2683  glycine cleavage system T protein [KO:K00605] [EC:2.1.2.10]
Pnap_1784  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Pnap_1858  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Pnap_2684  glycine cleavage system H protein [KO:K02437]
Pnap_1600  2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
Pnap_1018  glycerate 2-kinase [KO:K11529] [EC:2.7.1.165]
Pnap_1016  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
Pnap_1632  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
Pnap_2985  2-keto-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
Pnap_0834  molybdopterin oxidoreductase [KO:K00123] [EC:1.17.1.9]
Pnap_0825  NAD-dependent formate dehydrogenase flavoprotein subunit [KO:K22515] [EC:1.17.1.9]
Pnap_0835  formate dehydrogenase beta subunit [KO:K00124]
Pnap_0837  formate dehydrogenase gamma subunit [KO:K00127]
Pnap_3018  Kynurenine formamidase [KO:K07130] [EC:3.5.1.9]
Pnap_0297  formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
pna00010  Glycolysis / Gluconeogenesis
pna00020  Citrate cycle (TCA cycle)
pna00030  Pentose phosphate pathway
pna00053  Ascorbate and aldarate metabolism
pna00071  Fatty acid degradation
pna00230  Purine metabolism
pna00250  Alanine, aspartate and glutamate metabolism
pna00260  Glycine, serine and threonine metabolism
pna00620  Pyruvate metabolism
pna00710  Carbon fixation by Calvin cycle
pna00750  Vitamin B6 metabolism
pna00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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