KEGG   PATHWAY: poo00630
Entry
poo00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Polaromonas sp. Pch-P
Class
Metabolism; Carbohydrate metabolism
Pathway map
poo00630  Glyoxylate and dicarboxylate metabolism
poo00630

Module
poo_M00012  Glyoxylate cycle [PATH:poo00630]
poo_M00621  Glycine cleavage system [PATH:poo00630]
Other DBs
GO: 0046487 0043648
Organism
Polaromonas sp. Pch-P [GN:poo]
Gene
F7R28_10865  aceA; isocitrate lyase [KO:K01637] [EC:4.1.3.1]
F7R28_08510  AMP-binding protein [KO:K01895] [EC:6.2.1.1]
F7R28_01150  malate synthase G [KO:K01638] [EC:2.3.3.9]
F7R28_18220  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
F7R28_18255  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
F7R28_10170  citrate synthase [KO:K01647] [EC:2.3.3.1]
F7R28_18145  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
F7R28_18200  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
F7R28_11065  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
F7R28_12680  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
F7R28_13550  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
F7R28_00185  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
F7R28_11070  phbB; acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
F7R28_11155  acetyl-CoA carboxylase biotin carboxylase subunit [KO:K01965] [EC:6.4.1.3]
F7R28_11145  methylmalonyl-CoA carboxyltransferase [KO:K01966] [EC:6.4.1.3 2.1.3.15]
F7R28_11130  scpA; methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
F7R28_04635  FAD-binding protein [KO:K00104] [EC:1.1.99.14]
F7R28_03545  glcE; glycolate oxidase subunit GlcE [KO:K11472] [EC:1.1.99.14]
F7R28_03555  glcF; glycolate oxidase subunit GlcF [KO:K11473] [EC:1.1.99.14]
F7R28_14080  catalase [KO:K03781] [EC:1.11.1.6]
F7R28_07815  catalase [KO:K03781] [EC:1.11.1.6]
F7R28_10090  catalase [KO:K03781] [EC:1.11.1.6]
F7R28_00085  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
F7R28_15905  D-glycerate dehydrogenase [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
F7R28_00870  gph; phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
F7R28_18500  HAD-IA family hydrolase [KO:K01091] [EC:3.1.3.18]
F7R28_15565  aminotransferase class V-fold PLP-dependent enzyme [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
F7R28_03120  aminotransferase class V-fold PLP-dependent enzyme [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
F7R28_09625  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
F7R28_11005  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
F7R28_10445  aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme [KO:K00600] [EC:2.1.2.1]
F7R28_09895  gcvP; aminomethyl-transferring glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
F7R28_09905  gcvT; glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
F7R28_12130  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
F7R28_12460  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
F7R28_09900  gcvH; glycine cleavage system protein GcvH [KO:K02437]
F7R28_11575  gcl; glyoxylate carboligase [KO:K01608] [EC:4.1.1.47]
F7R28_11570  hyi; hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
F7R28_16075  glxR; 2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
F7R28_11565  glxR; 2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
F7R28_08925  NAD-binding protein [KO:K00042] [EC:1.1.1.60]
F7R28_08190  DUF4147 domain-containing protein [KO:K11529] [EC:2.7.1.165]
F7R28_15850  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
F7R28_17945  eda; bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
F7R28_19660  formate dehydrogenase [KO:K00126] [EC:1.17.1.9]
F7R28_11485  formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
F7R28_19630  molybdopterin-dependent oxidoreductase [KO:K00123] [EC:1.17.1.9]
F7R28_19670  formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
F7R28_11495  NADH-quinone oxidoreductase subunit F [KO:K22515] [EC:1.17.1.9]
F7R28_19625  4Fe-4S dicluster domain-containing protein [KO:K00124]
F7R28_19675  formate dehydrogenase [KO:K00124]
F7R28_19615  formate dehydrogenase subunit gamma [KO:K00127]
F7R28_19680  formate dehydrogenase subunit gamma [KO:K00127]
F7R28_01985  carboxylesterase family protein [KO:K01432] [EC:3.5.1.9]
F7R28_01990  alpha/beta hydrolase fold domain-containing protein [KO:K01432] [EC:3.5.1.9]
F7R28_08110  alpha/beta hydrolase fold domain-containing protein [KO:K01432] [EC:3.5.1.9]
F7R28_08945  alpha/beta hydrolase fold domain-containing protein [KO:K01432] [EC:3.5.1.9]
F7R28_18070  kynB; arylformamidase [KO:K07130] [EC:3.5.1.9]
F7R28_04650  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
F7R28_08310  acetamidase/formamidase family protein [KO:K01455] [EC:3.5.1.49]
F7R28_07030  hutG; N-formylglutamate deformylase [KO:K01458] [EC:3.5.1.68]
F7R28_11515  oxalyl-CoA decarboxylase [KO:K01577] [EC:4.1.1.8]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
poo00010  Glycolysis / Gluconeogenesis
poo00020  Citrate cycle (TCA cycle)
poo00030  Pentose phosphate pathway
poo00053  Ascorbate and aldarate metabolism
poo00071  Fatty acid degradation
poo00230  Purine metabolism
poo00250  Alanine, aspartate and glutamate metabolism
poo00260  Glycine, serine and threonine metabolism
poo00620  Pyruvate metabolism
poo00710  Carbon fixation by Calvin cycle
poo00750  Vitamin B6 metabolism
poo00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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