KEGG   PATHWAY: ppab00630
Entry
ppab00630                   Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Paenibacillus pabuli
Class
Metabolism; Carbohydrate metabolism
Pathway map
ppab00630  Glyoxylate and dicarboxylate metabolism
ppab00630

Module
ppab_M00621  Glycine cleavage system [PATH:ppab00630]
Other DBs
GO: 0046487 0043648
Organism
Paenibacillus pabuli [GN:ppab]
Gene
KET34_23635  acsA; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
KET34_14680  acyl--CoA ligase [KO:K01895] [EC:6.2.1.1]
KET34_10515  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
KET34_10505  citZ; citrate synthase [KO:K01647] [EC:2.3.3.1]
KET34_03620  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
KET34_29750  thiolase family protein [KO:K00626] [EC:2.3.1.9]
KET34_23215  catalase [KO:K03781] [EC:1.11.1.6]
KET34_31945  catalase [KO:K03781] [EC:1.11.1.6]
KET34_18470  catalase [KO:K03781] [EC:1.11.1.6]
KET34_27250  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
KET34_33405  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
KET34_10395  HAD hydrolase-like protein [KO:K01091] [EC:3.1.3.18]
KET34_21155  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
KET34_09785  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
KET34_31410  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
KET34_27170  gcvPA; aminomethyl-transferring glycine dehydrogenase subunit GcvPA [KO:K00282] [EC:1.4.4.2]
KET34_27175  gcvPB; aminomethyl-transferring glycine dehydrogenase subunit GcvPB [KO:K00283] [EC:1.4.4.2]
KET34_27165  gcvT; glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
KET34_22770  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
KET34_04310  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
KET34_20905  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
KET34_27160  gcvH; glycine cleavage system protein GcvH [KO:K02437]
KET34_33465  glycerate kinase [KO:K00865] [EC:2.7.1.165]
KET34_27260  bifunctional 2-keto-4-hydroxyglutarate aldolase/2-keto-3-deoxy-6-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
KET34_29490  bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
KET34_05025  cupin domain-containing protein [KO:K01569] [EC:4.1.1.2]
KET34_11190  oxalate decarboxylase family bicupin [KO:K01569] [EC:4.1.1.2]
KET34_07675  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
ppab00010  Glycolysis / Gluconeogenesis
ppab00020  Citrate cycle (TCA cycle)
ppab00030  Pentose phosphate pathway
ppab00053  Ascorbate and aldarate metabolism
ppab00071  Fatty acid degradation
ppab00230  Purine metabolism
ppab00250  Alanine, aspartate and glutamate metabolism
ppab00260  Glycine, serine and threonine metabolism
ppab00620  Pyruvate metabolism
ppab00710  Carbon fixation by Calvin cycle
ppab00750  Vitamin B6 metabolism
ppab00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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