KEGG   PATHWAY: ppan00362
Entry
ppan00362                   Pathway                                
Name
Benzoate degradation - Paracoccus pantotrophus
Class
Metabolism; Xenobiotics biodegradation and metabolism
Pathway map
ppan00362  Benzoate degradation
ppan00362

Module
ppan_M00568  Catechol ortho-cleavage, catechol => 3-oxoadipate [PATH:ppan00362]
Other DBs
UMBBD: benz2 benz abs
GO: 0043639
Organism
Paracoccus pantotrophus [GN:ppan]
Gene
ESD82_01820  Rieske 2Fe-2S domain-containing protein [KO:K05549] [EC:1.14.12.10 1.14.12.-]
ESD82_01815  benB; benzoate 1,2-dioxygenase small subunit [KO:K05550] [EC:1.14.12.10 1.14.12.-]
ESD82_01805  1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase [KO:K05783] [EC:1.3.1.25 1.3.1.-]
ESD82_01825  catA; catechol 1,2-dioxygenase [KO:K03381] [EC:1.13.11.1]
ESD82_01835  muconate cycloisomerase [KO:K01856] [EC:5.5.1.1]
ESD82_01830  catC; muconolactone Delta-isomerase [KO:K03464] [EC:5.3.3.4]
ESD82_01795  pcaD; 3-oxoadipate enol-lactonase [KO:K01055] [EC:3.1.1.24]
ESD82_05190  pcaD; 3-oxoadipate enol-lactonase [KO:K01055] [EC:3.1.1.24]
ESD82_09895  3-oxoacid CoA-transferase subunit A [KO:K01031] [EC:2.8.3.6]
ESD82_09890  CoA transferase subunit B [KO:K01032] [EC:2.8.3.6]
ESD82_07055  pcaF; 3-oxoadipyl-CoA thiolase [KO:K07823] [EC:2.3.1.174]
ESD82_09810  pcaF; 3-oxoadipyl-CoA thiolase [KO:K07823] [EC:2.3.1.174]
ESD82_09885  pcaF; 3-oxoadipyl-CoA thiolase [KO:K07823] [EC:2.3.1.174]
ESD82_19290  VOC family protein [KO:K07104] [EC:1.13.11.2]
ESD82_10200  hydratase [KO:K02554] [EC:4.2.1.80]
ESD82_09910  bifunctional 3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase [KO:K20943] [EC:1.14.13.219]
ESD82_09860  intradiol ring-cleavage dioxygenase [KO:K04098] [EC:1.13.11.37]
ESD82_09875  maleylacetate reductase [KO:K00217] [EC:1.3.1.32]
ESD82_05175  pcaG; protocatechuate 3,4-dioxygenase subunit alpha [KO:K00448] [EC:1.13.11.3]
ESD82_05180  pcaH; protocatechuate 3,4-dioxygenase subunit beta [KO:K00449] [EC:1.13.11.3]
ESD82_05165  adenylosuccinate lyase family protein [KO:K01857] [EC:5.5.1.2]
ESD82_05185  pcaC; 4-carboxymuconolactone decarboxylase [KO:K01607] [EC:4.1.1.44]
ESD82_12895  carboxymuconolactone decarboxylase family protein [KO:K01607] [EC:4.1.1.44]
ESD82_12900  carboxymuconolactone decarboxylase family protein [KO:K01607] [EC:4.1.1.44]
ESD82_14315  4-oxalomesaconate tautomerase [KO:K16514] [EC:5.3.2.8]
ESD82_01070  amidohydrolase [KO:K10220] [EC:4.2.1.83]
ESD82_14295  PIG-L family deacetylase [KO:K16515] [EC:4.2.1.83]
ESD82_20465  4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase [KO:K10218] [EC:4.1.3.17]
ESD82_14305  ligK; 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase [KO:K10218] [EC:4.1.3.17]
ESD82_18865  pyridine nucleotide-disulfide oxidoreductase [KO:K00529] [EC:1.18.1.3]
ESD82_08065  pyridine nucleotide-disulfide oxidoreductase [KO:K00529] [EC:1.18.1.3]
ESD82_04670  2Fe-2S iron-sulfur cluster binding domain-containing protein [KO:K04755]
ESD82_07915  2Fe-2S iron-sulfur cluster binding domain-containing protein [KO:K04755]
ESD82_05205  pobA; 4-hydroxybenzoate 3-monooxygenase [KO:K00481] [EC:1.14.13.2]
ESD82_07030  acyl-CoA thioesterase [KO:K01075] [EC:3.1.2.23]
ESD82_10165  acyl-CoA thioesterase [KO:K01075] [EC:3.1.2.23]
ESD82_07070  aliA; cyclohexanecarboxylate-CoA ligase [KO:K04116] [EC:6.2.1.-]
ESD82_07075  aliB; cyclohexanecarboxyl-CoA dehydrogenase [KO:K04117] [EC:1.3.99.-]
ESD82_07110  glucose 1-dehydrogenase [KO:K07535] [EC:1.1.1.-]
ESD82_10420  SDR family oxidoreductase [KO:K07535] [EC:1.1.1.-]
ESD82_07105  badI; 2-ketocyclohexanecarboxyl-CoA hydrolase [KO:K07536] [EC:3.1.2.-]
ESD82_07335  3-hydroxyacyl-CoA dehydrogenase [KO:K01782] [EC:1.1.1.35 4.2.1.17 5.1.2.3]
ESD82_07060  enoyl-CoA hydratase [KO:K07516] [EC:1.1.1.35]
ESD82_09545  3-hydroxyacyl-CoA dehydrogenase [KO:K07516] [EC:1.1.1.35]
ESD82_10360  3-hydroxyacyl-CoA dehydrogenase [KO:K07516] [EC:1.1.1.35]
ESD82_02535  acyl-CoA dehydrogenase [KO:K00252] [EC:1.3.8.6]
ESD82_07050  acyl-CoA dehydrogenase [KO:K00252] [EC:1.3.8.6]
ESD82_10195  3-hydroxybutyryl-CoA dehydrogenase [KO:K00074] [EC:1.1.1.157]
ESD82_11490  3-hydroxybutyryl-CoA dehydrogenase [KO:K00074] [EC:1.1.1.157]
ESD82_17305  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
ESD82_00115  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
ESD82_07330  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
ESD82_09930  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
ESD82_10370  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
ESD82_10765  acetyl-CoA C-acyltransferase family protein [KO:K00626] [EC:2.3.1.9]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00036  Oxaloacetate
C00084  Acetaldehyde
C00090  Catechol
C00091  Succinyl-CoA
C00146  Phenol
C00156  4-Hydroxybenzoate
C00180  Benzoate
C00196  2,3-Dihydroxybenzoate
C00230  3,4-Dihydroxybenzoate
C00332  Acetoacetyl-CoA
C00512  Benzoyl-CoA
C00527  Glutaryl-CoA
C00530  Hydroquinone
C00587  3-Hydroxybenzoate
C00596  2-Hydroxy-2,4-pentadienoate
C00628  2,5-Dihydroxybenzoate
C00682  2-Hydroxymuconate semialdehyde
C00846  3-Oxoadipate
C00877  Crotonoyl-CoA
C01063  Pimeloyl-CoA
C01144  (S)-3-Hydroxybutanoyl-CoA
C01163  3-Carboxy-cis,cis-muconate
C01278  2-Carboxy-2,5-dihydro-5-oxofuran-2-acetate
C01407  Benzene
C01751  Resorcinol
C02222  2-Maleylacetate
C02232  3-Oxoadipyl-CoA
C02411  Glutaconyl-1-CoA
C02480  cis,cis-Muconate
C02501  2-Hydroxymuconate
C02519  4-Methoxybenzoate
C02814  Benzene-1,2,4-triol
C02949  4-Hydroxybenzoyl-CoA
C03453  gamma-Oxalocrotonate
C03586  2-Oxo-2,3-dihydrofuran-5-acetate
C03589  4-Hydroxy-2-oxopentanoate
C03671  2-Pyrone-4,6-dicarboxylate
C03676  3-Hydroxy-cis,cis-muconate
C03767  4-Oxocyclohexanecarboxylate
C04091  cis-1,2-Dihydrobenzene-1,2-diol
C04115  4-Carboxy-4-hydroxy-2-oxoadipate
C04324  (1E,3E)-4-Hydroxybuta-1,3-diene-1,2,4-tricarboxylate
C04404  trans-4-Hydroxycyclohexanecarboxylate
C04434  (1E)-4-Oxobut-1-ene-1,2,4-tricarboxylate
C04480  3-Carboxy-2-hydroxymuconate semialdehyde
C04484  4-Carboxy-2-hydroxymuconate semialdehyde
C04553  3-Carboxy-2,5-dihydro-5-oxofuran-2-acetate
C05375  2-Hydroxy-2-hydropyrone-4,6-dicarboxylate
C06033  Parapyruvate
C06035  4-Methylene-2-oxoglutarate
C06321  (1R,6S)-1,6-Dihydroxycyclohexa-2,4-diene-1-carboxylate
C06322  Cyclohexa-1,5-diene-1-carbonyl-CoA
C06333  2-Aminobenzenesulfonate
C06336  3-Sulfocatechol
C06714  3-Hydroxypimeloyl-CoA
C06715  3-Oxopimeloyl-CoA
C06723  6-Carboxyhex-2-enoyl-CoA
C06749  6-Hydroxycyclohex-1-ene-1-carbonyl-CoA
C09809  Cyclohexa-2,5-diene-1-carbonyl-CoA
C09810  Cyclohexa-1,4-diene-1-carbonyl-CoA
C09811  Cyclohex-1-ene-1-carbonyl-CoA
C09812  2-Hydroxycyclohexane-1-carbonyl-CoA
C09813  2-Oxocyclohexane-1-carbonyl-CoA
C09821  6-Oxocyclohex-1-ene-1-carbonyl-CoA
C09822  Cyclohexane-1-carboxylate
C09823  Cyclohexane-1-carbonyl-CoA
C14144  5-Carboxy-2-pentenoyl-CoA
C14610  (S)-5-Oxo-2,5-dihydrofuran-2-acetate
C19682  3,4-Didehydroadipyl-CoA
C19683  3,4-Didehydroadipyl-CoA semialdehyde
C19684  2,3-Epoxy-2,3-dihydrobenzoyl-CoA
C21298  2,6-Dihydroxybenzoate
C22885  cis-4-Hydroxycyclohexane-1-carboxylate
C22887  4-Oxocyclohex-2-ene-1-carboxylate
C22920  4-Oxocyclohex-2,5-dienecarboxylate
Reference
  Authors
Carmona M, Zamarro MT, Blazquez B, Durante-Rodriguez G, Juarez JF, Valderrama JA, Barragan MJ, Garcia JL, Diaz E
  Title
Anaerobic catabolism of aromatic compounds: a genetic and genomic view.
  Journal
Microbiol Mol Biol Rev 73:71-133 (2009)
DOI:10.1128/MMBR.00021-08
Reference
  Authors
Hara H, Masai E, Miyauchi K, Katayama Y, Fukuda M.
  Title
Characterization of the 4-carboxy-4-hydroxy-2-oxoadipate aldolase gene and operon structure of the protocatechuate 4,5-cleavage pathway genes in Sphingomonas paucimobilis SYK-6.
  Journal
J Bacteriol 185:41-50 (2003)
DOI:10.1128/JB.185.1.41-50.2003
Reference
  Authors
Maruyama K, Shibayama T, Ichikawa A, Sakou Y, Yamada S, Sugisaki H.
  Title
Cloning and characterization of the genes encoding enzymes for the protocatechuate meta-degradation pathway of Pseudomonas ochraceae NGJ1.
  Journal
Biosci Biotechnol Biochem 68:1434-41 (2004)
DOI:10.1271/bbb.68.1434
Reference
  Authors
Mampel J, Ruff J, Junker F, Cook AM.
  Title
The oxygenase component of the 2-aminobenzenesulfonate dioxygenase system from Alcaligenes sp. strain O-1.
  Journal
Microbiology 145 ( Pt 11):3255-64 (1999)
DOI:10.1099/00221287-145-11-3255
Reference
PMID:8002948
  Authors
Junker F, Field JA, Bangerter F, Ramsteiner K, Kohler HP, Joannou CL, Mason JR, Leisinger T, Cook AM.
  Title
Oxygenation and spontaneous deamination of 2-aminobenzenesulphonic acid in Alcaligenes sp. strain O-1 with subsequent meta ring cleavage and spontaneous desulphonation to 2-hydroxymuconic acid.
  Journal
Biochem J 300 ( Pt 2):429-36 (1994)
DOI:10.1042/bj3000429
Reference
PMID:8990279
  Authors
Harwood CS, Gibson J.
  Title
Shedding light on anaerobic benzene ring degradation: a process unique to prokaryotes?
  Journal
J Bacteriol 179:301-9 (1997)
DOI:10.1128/JB.179.2.301-309.1997
Reference
  Authors
Peters F, Shinoda Y, McInerney MJ, Boll M.
  Title
Cyclohexa-1,5-diene-1-carbonyl-coenzyme A (CoA) hydratases of Geobacter metallireducens and Syntrophus aciditrophicus: Evidence for a common benzoyl-CoA degradation pathway in facultative and strict anaerobes.
  Journal
J Bacteriol 189:1055-60 (2007)
DOI:10.1128/JB.01467-06
Reference
  Authors
Cowles CE, Nichols NN, Harwood CS.
  Title
BenR, a XylS homologue, regulates three different pathways of aromatic acid degradation in Pseudomonas putida.
  Journal
J Bacteriol 182:6339-46 (2000)
DOI:10.1128/JB.182.22.6339-6346.2000
Reference
  Authors
Smith MA, Weaver VB, Young DM, Ornston LN.
  Title
Genes for chlorogenate and hydroxycinnamate catabolism (hca) are linked to functionally related genes in the dca-pca-qui-pob-hca chromosomal cluster of Acinetobacter sp. strain ADP1.
  Journal
Appl Environ Microbiol 69:524-32 (2003)
DOI:10.1128/AEM.69.1.524-532.2003
Reference
  Authors
Kuntze K, Shinoda Y, Moutakki H, McInerney MJ, Vogt C, Richnow HH, Boll M
  Title
6-Oxocyclohex-1-ene-1-carbonyl-coenzyme A hydrolases from obligately anaerobic bacteria: characterization and identification of its gene as a functional marker for aromatic compounds degrading anaerobes.
  Journal
Environ Microbiol 10:1547-56 (2008)
DOI:10.1111/j.1462-2920.2008.01570.x
Reference
  Authors
Pelletier DA, Harwood CS
  Title
2-Hydroxycyclohexanecarboxyl coenzyme A dehydrogenase, an enzyme characteristic of the anaerobic benzoate degradation pathway used by Rhodopseudomonas palustris.
  Journal
J Bacteriol 182:2753-60 (2000)
DOI:10.1128/JB.182.10.2753-2760.2000
Reference
  Authors
Elshahed MS, Bhupathiraju VK, Wofford NQ, Nanny MA, McInerney MJ
  Title
Metabolism of benzoate, cyclohex-1-ene carboxylate, and cyclohexane carboxylate by "Syntrophus aciditrophicus" strain SB in syntrophic association with H(2)-using microorganisms.
  Journal
Appl Environ Microbiol 67:1728-38 (2001)
DOI:10.1128/AEM.67.4.1728-1738.2001
Reference
  Authors
Nogales J, Canales A, Jimenez-Barbero J, Serra B, Pingarron JM, Garcia JL, Diaz E
  Title
Unravelling the gallic acid degradation pathway in bacteria: the gal cluster from Pseudomonas putida.
  Journal
Mol Microbiol 79:359-74 (2011)
DOI:10.1111/j.1365-2958.2010.07448.x
Related
pathway
ppan00010  Glycolysis / Gluconeogenesis
ppan00020  Citrate cycle (TCA cycle)
ppan00350  Tyrosine metabolism
ppan00360  Phenylalanine metabolism
ppan00361  Chlorocyclohexane and chlorobenzene degradation
ppan00627  Aminobenzoate degradation
ppan00790  Folate biosynthesis
KO pathway
ko00362   
LinkDB

DBGET integrated database retrieval system