KEGG   PATHWAY: ppei03008
Entry
ppei03008                   Pathway                                
Name
Ribosome biogenesis in eukaryotes - Pyricularia pennisetigena
Description
Ribosomes are the cellular factories responsible for making proteins. In eukaryotes, ribosome biogenesis involves the production and correct assembly of four rRNAs and about 80 ribosomal proteins. It requires hundreds of factors not present in the mature particle. In the absence of these proteins, ribosome biogenesis is stalled and cell growth is terminated even under optimal growth conditions. The primary pre-rRNA transcript is assembled into the 90S pre-ribosome, which contains both 40S and 60S assembly factors. Within this complex, the pre-rRNA is cleaved. pre-60S ribosomes are subjected to several sequential processing steps in the nucleoplasm involving numerous assembly intermediates before it is exported to the cytoplasm and matured into the 60S ribosomal subunit. The pre-40S ribosome is matured to the small ribosomal subunit in the cytoplasm by cleavage.
Class
Genetic Information Processing; Translation
Pathway map
ppei03008  Ribosome biogenesis in eukaryotes
ppei03008

Organism
Pyricularia pennisetigena [GN:ppei]
Gene
PpBr36_05139  hypothetical protein [KO:K03115]
PpBr36_08723  hypothetical protein [KO:K03115]
PpBr36_05624  uncharacterized protein [KO:K03097] [EC:2.7.11.1]
PpBr36_06408  uncharacterized protein [KO:K14544]
PpBr36_08386  hypothetical protein [KO:K14545]
PpBr36_00600  hypothetical protein [KO:K14546]
PpBr36_05732  uncharacterized protein [KO:K14548]
PpBr36_06251  uncharacterized protein [KO:K14549]
PpBr36_03368  hypothetical protein [KO:K14550]
PpBr36_00721  hypothetical protein [KO:K14552]
PpBr36_02861  hypothetical protein [KO:K14554]
PpBr36_01607  hypothetical protein [KO:K14555]
PpBr36_00373  hypothetical protein [KO:K14556]
PpBr36_06409  uncharacterized protein [KO:K14557]
PpBr36_02376  hypothetical protein [KO:K14558]
PpBr36_01897  hypothetical protein [KO:K14559]
PpBr36_04688  hypothetical protein [KO:K14560]
PpBr36_08163  hypothetical protein [KO:K14561]
PpBr36_07521  hypothetical protein [KO:K14563] [EC:2.1.1.-]
PpBr36_03858  hypothetical protein [KO:K14564]
PpBr36_07483  hypothetical protein [KO:K14565]
PpBr36_07056  hypothetical protein [KO:K12845]
PpBr36_02428  hypothetical protein [KO:K11131] [EC:5.4.99.-]
PpBr36_02826  hypothetical protein [KO:K11129]
PpBr36_06693  uncharacterized protein [KO:K11128]
PpBr36_07591  hypothetical protein [KO:K11130]
PpBr36_02121  hypothetical protein [KO:K14566]
PpBr36_08140  hypothetical protein [KO:K14567]
PpBr36_06283  uncharacterized protein [KO:K03685] [EC:3.1.26.3]
PpBr36_06726  uncharacterized protein [KO:K14568] [EC:2.1.1.260]
PpBr36_03047  hypothetical protein [KO:K14569]
PpBr36_03719  hypothetical protein [KO:K14521] [EC:2.3.1.-]
PpBr36_00208  hypothetical protein [KO:K11108]
PpBr36_09237  uncharacterized protein [KO:K01164] [EC:3.1.26.5]
PpBr36_03378  hypothetical protein [KO:K14522] [EC:3.1.26.5]
PpBr36_01425  hypothetical protein [KO:K03538] [EC:3.1.26.5]
PpBr36_02937  hypothetical protein [KO:K03537] [EC:3.1.26.5]
PpBr36_07420  hypothetical protein [KO:K14528] [EC:3.1.26.5]
PpBr36_05586  uncharacterized protein [KO:K03539] [EC:3.1.26.5]
PpBr36_07328  hypothetical protein [KO:K14530] [EC:3.1.26.5]
PpBr36_00126  hypothetical protein [KO:K14570] [EC:3.1.-.-]
PpBr36_02832  hypothetical protein [KO:K14570] [EC:3.1.-.-]
PpBr36_01968  hypothetical protein [KO:K12618] [EC:3.1.13.-]
PpBr36_08010  hypothetical protein [KO:K12619] [EC:3.1.13.-]
PpBr36_01768  hypothetical protein [KO:K06943]
PpBr36_01079  hypothetical protein [KO:K14537]
PpBr36_08960  hypothetical protein [KO:K14538]
PpBr36_07177  hypothetical protein [KO:K14571]
PpBr36_05966  uncharacterized protein [KO:K14572]
PpBr36_00511  hypothetical protein [KO:K14573]
PpBr36_07592  hypothetical protein [KO:K11883]
PpBr36_11179  uncharacterized protein [KO:K14758] [EC:2.7.11.1]
PpBr36_11400  uncharacterized protein [KO:K14758] [EC:2.7.11.1]
PpBr36_07731  hypothetical protein [KO:K07936]
PpBr36_07120  hypothetical protein [KO:K14290]
PpBr36_02636  hypothetical protein [KO:K07562]
PpBr36_00218  hypothetical protein [KO:K14284]
PpBr36_07425  hypothetical protein [KO:K14285]
PpBr36_01184  hypothetical protein [KO:K03264]
PpBr36_05149  hypothetical protein [KO:K14574]
PpBr36_03647  hypothetical protein [KO:K14536] [EC:3.6.5.-]
PpBr36_02436  hypothetical protein [KO:K14539] [EC:3.6.1.-]
PpBr36_02966  hypothetical protein [KO:K14575]
PpBr36_07395  hypothetical protein [KO:K18532] [EC:2.7.4.3]
PpBr36_02511  hypothetical protein [KO:K07178] [EC:2.7.11.1]
PpBr36_01747  hypothetical protein [KO:K07179] [EC:2.7.11.1]
Reference
  Authors
Freed EF, Bleichert F, Dutca LM, Baserga SJ
  Title
When ribosomes go bad: diseases of ribosome biogenesis.
  Journal
Mol Biosyst 6:481-93 (2010)
DOI:10.1039/b919670f
Reference
  Authors
Perez-Fernandez J, Roman A, De Las Rivas J, Bustelo XR, Dosil M
  Title
The 90S preribosome is a multimodular structure that is assembled through a hierarchical mechanism.
  Journal
Mol Cell Biol 27:5414-29 (2007)
DOI:10.1128/MCB.00380-07
Reference
  Authors
Strunk BS, Karbstein K
  Title
Powering through ribosome assembly.
  Journal
RNA 15:2083-104 (2009)
DOI:10.1261/rna.1792109
Reference
  Authors
Granneman S, Baserga SJ
  Title
Ribosome biogenesis: of knobs and RNA processing.
  Journal
Exp Cell Res 296:43-50 (2004)
DOI:10.1016/j.yexcr.2004.03.016
Reference
  Authors
Kressler D, Hurt E, Bassler J
  Title
Driving ribosome assembly.
  Journal
Biochim Biophys Acta 1803:673-83 (2010)
DOI:10.1016/j.bbamcr.2009.10.009
Related
pathway
ppei03010  Ribosome
KO pathway
ko03008   
LinkDB

DBGET integrated database retrieval system