KEGG   PATHWAY: pper00630
Entry
pper00630                   Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Prunus persica (peach)
Class
Metabolism; Carbohydrate metabolism
Pathway map
pper00630  Glyoxylate and dicarboxylate metabolism
pper00630

Module
pper_M00012  Glyoxylate cycle [PATH:pper00630]
pper_M00532  Photorespiration [PATH:pper00630]
pper_M00621  Glycine cleavage system [PATH:pper00630]
Other DBs
GO: 0046487 0043648
Organism
Prunus persica (peach) [GN:pper]
Gene
18784380  isocitrate lyase [KO:K01637] [EC:4.1.3.1 4.1.3.30]
18783739  acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal [KO:K01895] [EC:6.2.1.1]
18789170  acetate/butyrate--CoA ligase AAE7, peroxisomal [KO:K01913] [EC:6.2.1.1 6.2.1.2]
18777105  malate synthase, glyoxysomal [KO:K01638] [EC:2.3.3.9]
18779761  malate dehydrogenase, cytoplasmic isoform X2 [KO:K00025] [EC:1.1.1.37]
18788358  malate dehydrogenase [KO:K00025] [EC:1.1.1.37]
18768488  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
18780643  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
18777783  malate dehydrogenase, chloroplastic [KO:K00026] [EC:1.1.1.37]
18773149  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
18780671  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
18782404  citrate synthase, glyoxysomal [KO:K01647] [EC:2.3.3.1]
18787309  citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
18770920  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
18781917  aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
18781883  acetyl-CoA acetyltransferase, cytosolic 1 [KO:K00626] [EC:2.3.1.9]
18780173  acetyl-CoA acetyltransferase, cytosolic 1 [KO:K00626] [EC:2.3.1.9]
109947425  peroxisomal (S)-2-hydroxy-acid oxidase GLO3-like [KO:K11517] [EC:1.1.3.15]
18779102  peroxisomal (S)-2-hydroxy-acid oxidase GLO1 isoform X1 [KO:K11517] [EC:1.1.3.15]
18778995  peroxisomal (S)-2-hydroxy-acid oxidase GLO1 isoform X1 [KO:K11517] [EC:1.1.3.15]
18782817  peroxisomal (S)-2-hydroxy-acid oxidase GLO4 isoform X1 [KO:K11517] [EC:1.1.3.15]
18777304  catalase isozyme 1 [KO:K03781] [EC:1.11.1.6]
18776773  catalase isozyme 1 [KO:K03781] [EC:1.11.1.6]
18785893  glyoxylate/hydroxypyruvate reductase HPR3 [KO:K15919] [EC:1.1.1.79 1.1.1.81]
109947468  glyoxylate/hydroxypyruvate reductase HPR3-like [KO:K15919] [EC:1.1.1.79 1.1.1.81]
18787292  glyoxylate/hydroxypyruvate reductase HPR3 [KO:K15919] [EC:1.1.1.79 1.1.1.81]
18787444  glyoxylate/hydroxypyruvate reductase HPR3 isoform X1 [KO:K15919] [EC:1.1.1.79 1.1.1.81]
18786725  glyoxylate/hydroxypyruvate reductase HPR3 [KO:K15919] [EC:1.1.1.79 1.1.1.81]
18769728  glyoxylate/succinic semialdehyde reductase 1 [KO:K18121] [EC:1.1.1.79 1.1.1.-]
18782190  glyoxylate/succinic semialdehyde reductase 2, chloroplastic [KO:K18121] [EC:1.1.1.79 1.1.1.-]
18766854  glycerate dehydrogenase [KO:K15893] [EC:1.1.1.29]
18770318  glycerate dehydrogenase [KO:K15893] [EC:1.1.1.29]
18775585  phosphoglycolate phosphatase 1B, chloroplastic [KO:K19269] [EC:3.1.3.18 3.1.3.48]
18785342  phosphoglycolate phosphatase 1B, chloroplastic [KO:K19269] [EC:3.1.3.18 3.1.3.48]
18778328  phosphoglycolate phosphatase 2 isoform X1 [KO:K19269] [EC:3.1.3.18 3.1.3.48]
9978733  rbcL; ribulose 1,5-bisphosphate carboxylase/oxygenase large subunit [KO:K01601] [EC:4.1.1.39]
18783492  ribulose bisphosphate carboxylase small chain, chloroplastic [KO:K01602] [EC:4.1.1.39]
18793848  ribulose bisphosphate carboxylase small chain clone 512 [KO:K01602] [EC:4.1.1.39]
18789951  ribulose bisphosphate carboxylase small chain F1, chloroplastic [KO:K01602] [EC:4.1.1.39]
18781078  serine--glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
18788891  glutamate--glyoxylate aminotransferase 2 [KO:K14272] [EC:2.6.1.4 2.6.1.2 2.6.1.44]
18770391  ferredoxin-dependent glutamate synthase, chloroplastic [KO:K00284] [EC:1.4.7.1]
18782751  glutamine synthetase cytosolic isozyme [KO:K01915] [EC:6.3.1.2]
18776656  glutamine synthetase nodule isozyme [KO:K01915] [EC:6.3.1.2]
18790849  glutamine synthetase leaf isozyme, chloroplastic [KO:K01915] [EC:6.3.1.2]
18789212  glutamine synthetase nodule isozyme [KO:K01915] [EC:6.3.1.2]
18766436  serine hydroxymethyltransferase 3, chloroplastic [KO:K00600] [EC:2.1.2.1]
18781854  serine hydroxymethyltransferase 3, chloroplastic [KO:K00600] [EC:2.1.2.1]
18774648  serine hydroxymethyltransferase, mitochondrial [KO:K00600] [EC:2.1.2.1]
18793358  serine hydroxymethyltransferase 4 [KO:K00600] [EC:2.1.2.1]
18792728  serine hydroxymethyltransferase 7 [KO:K00600] [EC:2.1.2.1]
18791514  serine hydroxymethyltransferase, mitochondrial [KO:K00600] [EC:2.1.2.1]
18792086  serine hydroxymethyltransferase 7 [KO:K00600] [EC:2.1.2.1]
18788414  glycine dehydrogenase (decarboxylating), mitochondrial [KO:K00281] [EC:1.4.4.2]
18779746  aminomethyltransferase, mitochondrial [KO:K00605] [EC:2.1.2.10]
18793393  dihydrolipoyl dehydrogenase 1, chloroplastic [KO:K00382] [EC:1.8.1.4]
18789271  dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
18777607  glycine cleavage system H protein, mitochondrial [KO:K02437]
18781505  glycine cleavage system H protein 2, mitochondrial [KO:K02437]
18782619  D-glycerate 3-kinase, chloroplastic [KO:K15918] [EC:2.7.1.31]
18781826  formate dehydrogenase, mitochondrial isoform X2 [KO:K00122] [EC:1.17.1.9]
18776016  formyltetrahydrofolate deformylase 1, mitochondrial isoform X1 [KO:K01433] [EC:3.5.1.10]
18772580  uncharacterized protein LOC18772580 isoform X1 [KO:K01455] [EC:3.5.1.49]
18775685  oxalate--CoA ligase [KO:K22133] [EC:6.2.1.8]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
pper00010  Glycolysis / Gluconeogenesis
pper00020  Citrate cycle (TCA cycle)
pper00030  Pentose phosphate pathway
pper00053  Ascorbate and aldarate metabolism
pper00071  Fatty acid degradation
pper00230  Purine metabolism
pper00250  Alanine, aspartate and glutamate metabolism
pper00260  Glycine, serine and threonine metabolism
pper00620  Pyruvate metabolism
pper00710  Carbon fixation by Calvin cycle
pper00750  Vitamin B6 metabolism
pper00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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