KEGG   PATHWAY: ppu00240
Entry
ppu00240                    Pathway                                
Name
Pyrimidine metabolism - Pseudomonas putida KT2440
Class
Metabolism; Nucleotide metabolism
Pathway map
ppu00240  Pyrimidine metabolism
ppu00240

Module
ppu_M00046  Pyrimidine degradation, uracil => beta-alanine, thymine => 3-aminoisobutanoate [PATH:ppu00240]
ppu_M00052  Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:ppu00240]
ppu_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:ppu00240]
Other DBs
GO: 0006220 0006213
Organism
Pseudomonas putida KT2440 [GN:ppu]
Gene
PP_4723  carB; Carbamoyl-phosphate synthase large chain [KO:K01955] [EC:6.3.5.5]
PP_4724  carA; Carbamoyl-phosphate synthase small chain [KO:K01956] [EC:6.3.5.5]
PP_4998  pyrB; Aspartate carbamoyltransferase [KO:K00609] [EC:2.1.3.2]
PP_1086  pyrC; dihydroorotase [KO:K01465] [EC:3.5.2.3]
PP_4999  pyrC'; dihydroorotase-like protein [KO:K01465] [EC:3.5.2.3]
PP_2095  pyrD; Dihydroorotate dehydrogenase (quinone) [KO:K00254] [EC:1.3.5.2]
PP_5291  pyrE; Orotate phosphoribosyltransferase [KO:K00762] [EC:2.4.2.10]
PP_1815  pyrF; Orotidine 5'-phosphate decarboxylase [KO:K01591] [EC:4.1.1.23]
PP_1593  pyrH; Uridylate kinase [KO:K09903] [EC:2.7.4.22]
PP_0849  ndk; Nucleoside diphosphate kinase [KO:K00940] [EC:2.7.4.6]
PP_1657  mazG; modified nucleoside triphosphate pyrophosphohydrolase [KO:K04765] [EC:3.6.1.9]
PP_0936  maf; septum formation protein [KO:K06287] [EC:3.6.1.-]
PP_4958  ygjP; putative metal-dependent hydrolase [KO:K07043] [EC:3.6.1.-]
PP_1610  pyrG; CTP synthase [KO:K01937] [EC:6.3.4.2]
PP_1771  cmk; Cytidylate kinase [KO:K00945] [EC:2.7.4.25]
PP_1414  ushA; 5'-nucleotidase - 2',3'-cyclic phosphodiesterase [KO:K01081] [EC:3.1.3.5]
PP_2531  putative 5-nucleotidase [KO:K01081] [EC:3.1.3.5]
PP_1620  surE; 5'(3')-nucleotidase and polyphosphatase [KO:K03787] [EC:3.1.3.5 3.1.3.6]
PP_4248  conserved protein of unknown function, UPF0345 family [KO:K09913] [EC:2.4.2.1 2.4.2.2]
PP_0746  upp; Uracil phosphoribosyltransferase [KO:K00761] [EC:2.4.2.9]
PP_4997  pyrR; pyrimidine operon regulatory protein/uracil phosphoribosyltransferase [KO:K02825] [EC:2.4.2.9]
PP_3238  putative Transcriptional regulator PyrR [KO:K02825] [EC:2.4.2.9]
PP_3662  conserved protein of unknown function [KO:K06966] [EC:3.2.2.10 3.2.2.-]
PP_3189  codA; cytosine deaminase / isoguanine deaminase [KO:K01485] [EC:3.5.4.1 3.5.4.21]
PP_1100  dcd; Deoxycytidine triphosphate deaminase [KO:K01494] [EC:3.5.4.13]
PP_1179  nrdA; Ribonucleoside-diphosphate reductase subunit alpha [KO:K00525] [EC:1.17.4.1]
PP_1177  nrdB; Ribonucleoside-diphosphate reductase subunit beta [KO:K00526] [EC:1.17.4.1]
PP_5286  dut; deoxyuridine 5'-triphosphate nucleotidohydrolase [KO:K01520] [EC:3.6.1.23]
PP_5141  thyA; Thymidylate synthase [KO:K00560] [EC:2.1.1.45]
PP_4037  pydX; NADP-dependent dihydropyrimidine dehydrogenase subunit [KO:K17722] [EC:1.3.1.1]
PP_4038  pydA; NADP-dependent dihydropyrimidine dehydrogenase subunit PreA [KO:K17723] [EC:1.3.1.1]
PP_4036  pydB; D-hydantoinase/dihydropyrimidinase [KO:K01464] [EC:3.5.2.2]
PP_0614  putative N-carbamoyl-beta-alanine amidohydrolase/allantoine amidohydrolase 1 [KO:K06016] [EC:3.5.1.6 3.5.1.87]
PP_4034  hyuC; N-carbamoyl-beta-alanine amidohydrolase/allantoine amidohydrolase 2 [KO:K06016] [EC:3.5.1.6 3.5.1.87]
PP_0488  putative NADP-dependent dehydrogenase HI_1430 [KO:K16066] [EC:1.1.1.381 1.1.1.-]
Compound
C00015  UDP
C00039  DNA
C00046  RNA
C00055  CMP
C00063  CTP
C00064  L-Glutamine
C00075  UTP
C00086  Urea
C00099  beta-Alanine
C00105  UMP
C00106  Uracil
C00112  CDP
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00169  Carbamoyl phosphate
C00178  Thymine
C00214  Thymidine
C00222  3-Oxopropanoate
C00239  dCMP
C00295  Orotate
C00299  Uridine
C00337  (S)-Dihydroorotate
C00363  dTDP
C00364  dTMP
C00365  dUMP
C00380  Cytosine
C00383  Malonate
C00429  5,6-Dihydrouracil
C00438  N-Carbamoyl-L-aspartate
C00458  dCTP
C00459  dTTP
C00460  dUTP
C00475  Cytidine
C00526  Deoxyuridine
C00672  2-Deoxy-D-ribose 1-phosphate
C00705  dCDP
C00813  Barbiturate
C00881  Deoxycytidine
C00941  3',5'-Cyclic CMP
C01013  3-Hydroxypropanoate
C01103  Orotidine 5'-phosphate
C01168  Pseudouridine 5'-phosphate
C01205  (R)-3-Amino-2-methylpropanoate
C01346  dUDP
C01368  3'-UMP
C01563  Carbamate
C02067  Pseudouridine
C02170  Methylmalonate
C02354  2',3'-Cyclic CMP
C02355  2',3'-Cyclic UMP
C02376  5-Methylcytosine
C02642  3-Ureidopropionate
C03997  5-Hydroxymethyldeoxycytidylate
C05281  5-Methylbarbiturate
C05822  3'-CMP
C06198  P1,P4-Bis(5'-uridyl) tetraphosphate
C11038  2'-Deoxy-5-hydroxymethylcytidine-5'-diphosphate
C11039  2'-Deoxy-5-hydroxymethylcytidine-5'-triphosphate
C15607  3-Oxo-3-ureidopropanoate
C20231  (Z)-3-Ureidoacrylate peracid
C20249  (Z)-3-Peroxyaminoacrylate
C20253  Aminoacrylate
C20254  Ureidoacrylate
C20846  3-Oxo-3-ureidoisobutyrate
C21028  (R)-5,6-Dihydrothymine
C21029  (R)-3-Ureidoisobutyrate
C22509  3',5'-Cyclic UMP
Related
pathway
ppu00030  Pentose phosphate pathway
ppu00220  Arginine biosynthesis
ppu00250  Alanine, aspartate and glutamate metabolism
ppu00280  Valine, leucine and isoleucine degradation
ppu00410  beta-Alanine metabolism
KO pathway
ko00240   
LinkDB

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