KEGG   PATHWAY: ppul03030
Entry
ppul03030                   Pathway                                
Name
DNA replication - Pandoraea pulmonicola
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
ppul03030  DNA replication
ppul03030

Organism
Pandoraea pulmonicola [GN:ppul]
Gene
RO07_20005  DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
RO07_00305  DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
RO07_02075  ethanolamine utilization protein [KO:K02342] [EC:2.7.7.7]
RO07_02730  DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
RO07_18515  DNA polymerase III, subunit gamma and tau [KO:K02343] [EC:2.7.7.7]
RO07_22230  DNA polymerase III subunit delta' [KO:K02341] [EC:2.7.7.7]
RO07_05215  DNA polymerase III subunit delta [KO:K02340] [EC:2.7.7.7]
RO07_14965  DNA polymerase III subunit chi [KO:K02339] [EC:2.7.7.7]
RO07_08535  DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
RO07_19510  replicative DNA helicase [KO:K02314] [EC:5.6.2.3]
RO07_25595  hypothetical protein [KO:K02314] [EC:5.6.2.3]
RO07_24510  DNA primase [KO:K02316] [EC:2.7.7.101]
RO07_11465  single-stranded DNA-binding protein [KO:K03111]
RO07_00300  ribonuclease HI [KO:K03469] [EC:3.1.26.4]
RO07_19880  ribonuclease HII [KO:K03470] [EC:3.1.26.4]
RO07_24580  DNA polymerase I [KO:K02335] [EC:2.7.7.7]
RO07_19785  ligA; DNA ligase (NAD(+)) LigA [KO:K01972] [EC:6.5.1.2]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   
LinkDB

DBGET integrated database retrieval system