KEGG   PATHWAY: ppv02025
Entry
ppv02025                    Pathway                                
Name
Biofilm formation - Pseudomonas aeruginosa - Pseudomonas parafulva
Description
Surface colonization and subsequent biofilm formation and development provide numerous advantages to microorganisms. The main key actors relevant in the regulation of biofilm formation by Pseudomonas aeruginosa include cAMP/Vfr signaling, quorum sensing (QS) systems, Gac/Rsm pathway, and c-di-GMP signaling. cAMP/Vfr signaling regulates the transcription of hundreds of genes encoding diverse virulence factors, including the type 2 secretion system and type 3 secretion system and their associated toxins, type IV pili, and flagella. It is demonstrated that the accumulation of cAMP inhibits the attachment phase of biofilm formation. The QS systems are arranged hierarchically with the las system positively regulating both the rhl and PQS systems. These three QS systems are involved in the regulation of virulence factor production, biofilm maturation, and motility phenotypes. GacS/GacA two-component system is promoting the expression of two small regulatory RNAs, RsmY and RsmZ, which sequester the translational repressor RsmA. Titration of RsmA induces the production of sessile and biofilm determinants, whereas free RsmA leads to a planktonic and more virulent lifestyle. c-di-GMP is a ubiquitous bacterial second messenger. Synthesis and degradation of c-di-GMP is facilitated by diguanylate cyclases (DGC) and phosphodiesterases (PDE). High intracellular levels of c-di-GMP evoke the processes leading to the production of biofilm matrix, while a decrease in its level causes an increase in cell motility and transition into the planktonic forms of growth.
Class
Cellular Processes; Cellular community - prokaryotes
Pathway map
ppv02025  Biofilm formation - Pseudomonas aeruginosa
ppv02025

Organism
Pseudomonas parafulva [GN:ppv]
Gene
NJ69_20900  chemotaxis protein [KO:K02660]
NJ69_20895  protein PilI [KO:K02659]
NJ69_20905  histidine kinase [KO:K06596]
NJ69_20910  chemotaxis protein [KO:K06598]
NJ69_20890  chemotaxis protein CheY [KO:K02658]
NJ69_20885  chemotaxis protein CheY [KO:K02657]
NJ69_21290  serine/threonine protein phosphatase [KO:K03651] [EC:3.1.4.53]
NJ69_16490  cyclic AMP receptor protein [KO:K10914]
NJ69_10975  ATPase AAA [KO:K10941]
NJ69_16520  anthranilate synthase component I [KO:K01657] [EC:4.1.3.27]
NJ69_16510  anthranilate synthase component II [KO:K01658] [EC:4.1.3.27]
NJ69_02780  chemotaxis protein CheY [KO:K07678] [EC:2.7.13.3]
NJ69_21790  histidine kinase [KO:K20972]
NJ69_04970  chemotaxis protein CheY [KO:K07689]
NJ69_11885  carbon storage regulator [KO:K03563]
NJ69_11215  carbon storage regulator [KO:K03563]
NJ69_09690  carbon storage regulator CsrA [KO:K03563]
NJ69_03590  histidine kinase [KO:K20973] [EC:2.7.13.3]
NJ69_10030  histidine kinase [KO:K20974] [EC:2.7.13.3]
NJ69_10920  histidine kinase [KO:K20976]
NJ69_10925  chemotaxis protein CheY [KO:K20977]
NJ69_10930  anti-anti-sigma factor [KO:K20978]
NJ69_11130  flagellar biosynthesis anti-sigma factor FlgM [KO:K02398]
NJ69_10855  fliA; flagellar biosynthesis sigma factor [KO:K02405]
NJ69_20425  serine/threonine protein kinase [KO:K11912] [EC:2.7.11.1]
NJ69_20420  PppA [KO:K11915] [EC:3.1.3.16]
NJ69_20415  type VI secretion system protein ImpM [KO:K11890]
NJ69_05100  type VI secretion protein VasK [KO:K11891]
NJ69_20410  type VI secretion protein IcmF [KO:K11891]
NJ69_05050  type VI secretion protein [KO:K11893]
NJ69_20400  type VI secretion protein [KO:K11893]
NJ69_20390  type VI secretion protein [KO:K11913]
NJ69_20385  type VI secretion protein ImpA [KO:K11902]
NJ69_05085  type VI secretion protein [KO:K11901]
NJ69_20380  hypothetical protein [KO:K11901]
NJ69_05080  type VI secretion protein [KO:K11900]
NJ69_20375  EvpB family type VI secretion protein [KO:K11900]
NJ69_05040  major exported protein [KO:K11903]
NJ69_20370  Hcp1 family type VI secretion system effector [KO:K11903]
NJ69_05065  type VI secretion protein [KO:K11895]
NJ69_20350  type VI secretion protein [KO:K11895]
NJ69_20345  ATPase AAA [KO:K11907]
NJ69_01890  chemotaxis protein [KO:K13487]
NJ69_01910  chemotaxis protein CheA [KO:K13490]
NJ69_01895  chemotaxis protein CheW [KO:K13488]
NJ69_01905  chemotaxis protein CheW [KO:K13489]
NJ69_01915  chemotaxis protein CheY [KO:K13491] [EC:3.1.1.61]
NJ69_01920  diguanylate cyclase [KO:K11444] [EC:2.7.7.65]
NJ69_00050  DeoR faimly transcriptional regulator [KO:K21021] [EC:2.7.7.65]
NJ69_13310  diguanylate cyclase [KO:K21024] [EC:3.1.4.52]
NJ69_13885  mannose-1-phosphate guanylyltransferase [KO:K16011] [EC:2.7.7.13 5.3.1.8]
NJ69_13840  hemolysin D [KO:K19291] [EC:2.4.1.33]
Compound
C00044  GTP
C00575  3',5'-Cyclic AMP
C11837  N-Butyryl-L-homoserine lactone
C11848  2-Heptyl-3-hydroxy-quinolone
C16463  3',5'-Cyclic diGMP
C18076  5'-Phosphoguanylyl(3'->5')guanosine
C20643  2-Heptyl-4(1H)-quinolone
C21201  N-3-Oxo-dodecanoyl-L-homoserine lactone
Reference
  Authors
Coggan KA, Wolfgang MC
  Title
Global regulatory pathways and cross-talk control pseudomonas aeruginosa environmental lifestyle and virulence phenotype.
  Journal
Curr Issues Mol Biol 14:47-70 (2012)
Reference
  Authors
Rasamiravaka T, Labtani Q, Duez P, El Jaziri M
  Title
The formation of biofilms by Pseudomonas aeruginosa: a review of the natural and synthetic compounds interfering with control mechanisms.
  Journal
Biomed Res Int 2015:759348 (2015)
DOI:10.1155/2015/759348
Reference
  Authors
Valentini M, Filloux A
  Title
Biofilms and Cyclic di-GMP (c-di-GMP) Signaling: Lessons from Pseudomonas aeruginosa and Other Bacteria.
  Journal
J Biol Chem 291:12547-55 (2016)
DOI:10.1074/jbc.R115.711507
Reference
  Authors
Hengge R
  Title
Principles of c-di-GMP signalling in bacteria.
  Journal
Nat Rev Microbiol 7:263-73 (2009)
DOI:10.1038/nrmicro2109
Reference
  Authors
Liang ZX
  Title
The expanding roles of c-di-GMP in the biosynthesis of exopolysaccharides and secondary metabolites.
  Journal
Nat Prod Rep 32:663-83 (2015)
DOI:10.1039/c4np00086b
Reference
  Authors
Fulcher NB, Holliday PM, Klem E, Cann MJ, Wolfgang MC
  Title
The Pseudomonas aeruginosa Chp chemosensory system regulates intracellular cAMP levels by modulating adenylate cyclase activity.
  Journal
Mol Microbiol 76:889-904 (2010)
DOI:10.1111/j.1365-2958.2010.07135.x
Reference
  Authors
Marsden AE, Intile PJ, Schulmeyer KH, Simmons-Patterson ER, Urbanowski ML, Wolfgang MC, Yahr TL
  Title
Vfr Directly Activates exsA Transcription To Regulate Expression of the Pseudomonas aeruginosa Type III Secretion System.
  Journal
J Bacteriol 198:1442-50 (2016)
DOI:10.1128/JB.00049-16
Reference
  Authors
Brencic A, Lory S
  Title
Determination of the regulon and identification of novel mRNA targets of Pseudomonas aeruginosa RsmA.
  Journal
Mol Microbiol 72:612-32 (2009)
DOI:10.1111/j.1365-2958.2009.06670.x
Reference
  Authors
Hsu JL, Chen HC, Peng HL, Chang HY
  Title
Characterization of the histidine-containing phosphotransfer protein B-mediated multistep phosphorelay system in Pseudomonas aeruginosa PAO1.
  Journal
J Biol Chem 283:9933-44 (2008)
DOI:10.1074/jbc.M708836200
Reference
  Authors
Guvener ZT, Harwood CS
  Title
Subcellular location characteristics of the Pseudomonas aeruginosa GGDEF protein, WspR, indicate that it produces cyclic-di-GMP in response to growth on surfaces.
  Journal
Mol Microbiol 66:1459-73 (2007)
DOI:10.1111/j.1365-2958.2007.06008.x
Reference
  Authors
Irie Y, Starkey M, Edwards AN, Wozniak DJ, Romeo T, Parsek MR
  Title
Pseudomonas aeruginosa biofilm matrix polysaccharide Psl is regulated transcriptionally by RpoS and post-transcriptionally by RsmA.
  Journal
Mol Microbiol 78:158-72 (2010)
DOI:10.1111/j.1365-2958.2010.07320.x
Related
pathway
ppv02024  Quorum sensing
ppv02040  Flagellar assembly
ppv03070  Bacterial secretion system
KO pathway
ko02025   
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