KEGG   PATHWAY: prb00630
Entry
prb00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Pandoraea pnomenusa
Class
Metabolism; Carbohydrate metabolism
Pathway map
prb00630  Glyoxylate and dicarboxylate metabolism
prb00630

Module
prb_M00012  Glyoxylate cycle [PATH:prb00630]
prb_M00621  Glycine cleavage system [PATH:prb00630]
Other DBs
GO: 0046487 0043648
Organism
Pandoraea pnomenusa [GN:prb]
Gene
X636_21650  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
X636_00165  AMP-dependent synthetase [KO:K01895] [EC:6.2.1.1]
X636_00885  AMP-dependent synthetase [KO:K01895] [EC:6.2.1.1]
X636_15025  acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
X636_17710  AMP-binding protein [KO:K01895] [EC:6.2.1.1]
X636_10920  malate synthase G [KO:K01638] [EC:2.3.3.9]
X636_21670  malate synthase A [KO:K01638] [EC:2.3.3.9]
X636_19865  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
X636_19900  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
X636_17295  citrate synthase [KO:K01647] [EC:2.3.3.1]
X636_22605  excisionase [KO:K01647] [EC:2.3.3.1]
X636_19855  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
X636_00960  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
X636_04365  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
X636_24315  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
X636_24625  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
X636_24650  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
X636_13555  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
X636_04530  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
X636_12550  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
X636_11080  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
X636_23780  beta-ketoacyl-ACP reductase [KO:K00023] [EC:1.1.1.36]
X636_24645  beta-ketoacyl-ACP reductase [KO:K00023] [EC:1.1.1.36]
X636_06175  glycolate oxidase subunit GlcD [KO:K00104] [EC:1.1.99.14]
X636_05560  glycolate oxidase subunit GlcD [KO:K00104] [EC:1.1.99.14]
X636_05570  glycolate oxidase subunit GlcE [KO:K11472] [EC:1.1.99.14]
X636_06180  glycolate oxidase subunit GlcE [KO:K11472] [EC:1.1.99.14]
X636_06185  glycolate oxidase iron-sulfur subunit [KO:K11473] [EC:1.1.99.14]
X636_14940  catalase [KO:K03781] [EC:1.11.1.6]
X636_12145  catalase [KO:K03781] [EC:1.11.1.6]
X636_07740  catalase [KO:K03781] [EC:1.11.1.6]
X636_01505  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
X636_12445  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
X636_14685  bifunctional glyoxylate/hydroxypyruvate reductase B [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
X636_06125  D-glycerate dehydrogenase [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
X636_06075  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
X636_08005  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
X636_03095  serine--glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
X636_21110  type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
X636_02760  glyA; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
X636_09860  glycine dehydrogenase (aminomethyl-transferring) [KO:K00281] [EC:1.4.4.2]
X636_09870  glycine cleavage system protein T [KO:K00605] [EC:2.1.2.10]
X636_00095  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
X636_20400  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
X636_09865  glycine cleavage system protein H [KO:K02437]
X636_21465  glyoxylate carboligase [KO:K01608] [EC:4.1.1.47]
X636_21460  hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
X636_21455  2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
X636_16480  2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
X636_01255  glycerate kinase [KO:K00865] [EC:2.7.1.165]
X636_14040  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
X636_14700  2-dehydro-3-deoxyphosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
X636_13910  formate dehydrogenase [KO:K00122] [EC:1.17.1.9]
X636_22205  formate dehydrogenase [KO:K00126] [EC:1.17.1.9]
X636_17875  formate dehydrogenase [KO:K00126] [EC:1.17.1.9]
X636_17880  formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
X636_18055  sulfate ABC transporter substrate-binding protein [KO:K00123] [EC:1.17.1.9]
X636_18060  formate dehydrogenase-N subunit alpha [KO:K00123] [EC:1.17.1.9]
X636_22195  formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
X636_22190  formate dehydrogenase [KO:K00124]
X636_18065  formate dehydrogenase subunit beta [KO:K00124]
X636_17885  formate dehydrogenase [KO:K00124]
X636_22185  formate dehydrogenase [KO:K00127]
X636_17890  formate dehydrogenase subunit gamma [KO:K00127]
X636_18070  formate dehydrogenase subunit gamma [KO:K00127]
X636_02660  esterase [KO:K01432] [EC:3.5.1.9]
X636_23090  esterase [KO:K01432] [EC:3.5.1.9]
X636_08520  hypothetical protein [KO:K01432] [EC:3.5.1.9]
X636_03385  arylformamidase [KO:K07130] [EC:3.5.1.9]
X636_13410  formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
X636_10710  formamidase [KO:K01455] [EC:3.5.1.49]
X636_17920  oxalyl-CoA decarboxylase [KO:K01577] [EC:4.1.1.8]
X636_17925  formyl-CoA transferase [KO:K07749] [EC:2.8.3.16]
X636_17935  formyl-CoA transferase [KO:K07749] [EC:2.8.3.16]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
prb00010  Glycolysis / Gluconeogenesis
prb00020  Citrate cycle (TCA cycle)
prb00030  Pentose phosphate pathway
prb00053  Ascorbate and aldarate metabolism
prb00071  Fatty acid degradation
prb00230  Purine metabolism
prb00250  Alanine, aspartate and glutamate metabolism
prb00260  Glycine, serine and threonine metabolism
prb00620  Pyruvate metabolism
prb00710  Carbon fixation by Calvin cycle
prb00750  Vitamin B6 metabolism
prb00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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