KEGG   PATHWAY: proi00020
Entry
proi00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Prosthecochloris sp. SCSIO W1103
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
proi00020  Citrate cycle (TCA cycle)
proi00020

Module
proi_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:proi00020]
proi_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:proi00020]
proi_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:proi00020]
proi_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:proi00020]
proi_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:proi00020]
Other DBs
GO: 0006099
Organism
Prosthecochloris sp. SCSIO W1103 [GN:proi]
Gene
OO005_02270  citrate synthase [KO:K01647] [EC:2.3.3.1]
OO005_05765  ATP citrate lyase [KO:K15230] [EC:2.3.3.8]
OO005_05760  acetate--CoA ligase family protein [KO:K15231] [EC:2.3.3.8]
OO005_12595  acnA; aconitate hydratase AcnA [KO:K27802] [EC:4.2.1.3 4.2.1.99]
OO005_03320  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
OO005_09610  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
OO005_07615  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
OO005_07675  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
OO005_11690  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
OO005_07670  thiamine pyrophosphate-dependent enzyme [KO:K00175] [EC:1.2.7.3 1.2.7.11]
OO005_11695  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
OO005_10960  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
OO005_08950  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
OO005_11965  FAD-binding protein [KO:K00239] [EC:1.3.5.1]
OO005_12755  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
OO005_11960  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
OO005_04020  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
OO005_11955  CoB--CoM heterodisulfide reductase iron-sulfur subunit B family protein [KO:K00241]
OO005_12765  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
OO005_12760  succinate dehydrogenase [KO:K00242]
OO005_04960  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
OO005_08640  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
OO005_05025  biotin attachment protein [KO:K01960] [EC:6.4.1.1]
OO005_00185  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
OO005_09915  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
proi00010  Glycolysis / Gluconeogenesis
proi00053  Ascorbate and aldarate metabolism
proi00061  Fatty acid biosynthesis
proi00071  Fatty acid degradation
proi00190  Oxidative phosphorylation
proi00220  Arginine biosynthesis
proi00250  Alanine, aspartate and glutamate metabolism
proi00280  Valine, leucine and isoleucine degradation
proi00350  Tyrosine metabolism
proi00470  D-Amino acid metabolism
proi00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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