KEGG   PATHWAY: pser00020
Entry
pser00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Pseudanabaena sp. ABRG5-3
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pser00020  Citrate cycle (TCA cycle)
pser00020

Module
pser_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pser00020]
pser_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pser00020]
Other DBs
GO: 0006099
Organism
Pseudanabaena sp. ABRG5-3 [GN:pser]
Gene
ABRG53_4095  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
ABRG53_0075  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
ABRG53_f053  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
ABRG53_2687  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
ABRG53_3117  sdhA; succinate dehydrogenase/fumarate reductase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
ABRG53_1403  sdhB; succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
ABRG53_1654  succinate dehydrogenase subunit C [KO:K00241]
ABRG53_2865  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
ABRG53_2776  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit [KO:K00161] [EC:1.2.4.1]
ABRG53_3073  pdhB; pyruvate dehydrogenase E1 beta subunit [KO:K00162] [EC:1.2.4.1]
ABRG53_3528  pdhC; branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pser00010  Glycolysis / Gluconeogenesis
pser00053  Ascorbate and aldarate metabolism
pser00061  Fatty acid biosynthesis
pser00071  Fatty acid degradation
pser00190  Oxidative phosphorylation
pser00220  Arginine biosynthesis
pser00250  Alanine, aspartate and glutamate metabolism
pser00280  Valine, leucine and isoleucine degradation
pser00350  Tyrosine metabolism
pser00470  D-Amino acid metabolism
pser00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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