KEGG   PATHWAY: pto00020
Entry
pto00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Picrophilus oshimae
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pto00020  Citrate cycle (TCA cycle)
pto00020

Module
pto_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:pto00020]
pto_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pto00020]
pto_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:pto00020]
pto_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pto00020]
Other DBs
GO: 0006099
Organism
Picrophilus oshimae [GN:pto]
Gene
PTO0889  citrate synthase [KO:K01647] [EC:2.3.3.1]
PTO0935  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
PTO0426  isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
PTO0168  isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
PTO0887  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
PTO0546  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
PTO1000  2-oxoglutarate synthase, alpha chain [KO:K00174] [EC:1.2.7.3 1.2.7.11]
PTO1360  pyruvate ferredoxin oxidoreductase, alpha chain [KO:K00174] [EC:1.2.7.3 1.2.7.11]
PTO0999  2-oxoglutarate synthase, beta chain [KO:K00175] [EC:1.2.7.3 1.2.7.11]
PTO1361  pyruvate ferredoxin oxidoreductase, beta chain [KO:K00175] [EC:1.2.7.3 1.2.7.11]
PTO1002  succinyl-CoA synthetase alpha chain [KO:K01902] [EC:6.2.1.5]
PTO1003  succinyl-CoA synthetase beta chain [KO:K01903] [EC:6.2.1.5]
PTO0995  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
PTO0996  succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
PTO0997  succinate dehydrogenase, subunit C [KO:K00241]
PTO0998  succinate dehydrogenase, subunit D [KO:K18859]
PTO0427  fumarate hydratase [KO:K01679] [EC:4.2.1.2]
PTO0994  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
PTO0549  pyruvate dehydrogenase E1 component alpha subunit [KO:K00161] [EC:1.2.4.1]
PTO0548  pyruvate dehydrogenase E1 component beta subunit [KO:K00162] [EC:1.2.4.1]
PTO0547  dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pto00010  Glycolysis / Gluconeogenesis
pto00061  Fatty acid biosynthesis
pto00071  Fatty acid degradation
pto00190  Oxidative phosphorylation
pto00220  Arginine biosynthesis
pto00250  Alanine, aspartate and glutamate metabolism
pto00280  Valine, leucine and isoleucine degradation
pto00350  Tyrosine metabolism
pto00470  D-Amino acid metabolism
pto00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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