KEGG   PATHWAY: pyg00020
Entry
pyg00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Paenibacillus yonginensis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pyg00020  Citrate cycle (TCA cycle)
pyg00020

Module
pyg_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:pyg00020]
pyg_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pyg00020]
pyg_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:pyg00020]
pyg_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pyg00020]
Other DBs
GO: 0006099
Organism
Paenibacillus yonginensis [GN:pyg]
Gene
AWM70_03465  citrate synthase [KO:K01647] [EC:2.3.3.1]
AWM70_22070  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
AWM70_03470  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
AWM70_10165  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
AWM70_08495  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
AWM70_05365  2-oxoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
AWM70_05370  2-oxoacid ferredoxin oxidoreductase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
AWM70_04905  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
AWM70_04900  sucC; succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
AWM70_14225  sdhA; succinate dehydrogenase [KO:K00239] [EC:1.3.5.1]
AWM70_14220  sdhB; succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
AWM70_14230  succinate dehydrogenase [KO:K00241]
AWM70_03490  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
AWM70_03475  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
AWM70_19765  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
AWM70_08510  pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
AWM70_08505  2-oxoisovalerate dehydrogenase [KO:K00162] [EC:1.2.4.1]
AWM70_08500  dienelactone hydrolase [KO:K00627] [EC:2.3.1.12]
AWM70_07840  pyruvate synthase [KO:K00169] [EC:1.2.7.1]
AWM70_07835  ferredoxin [KO:K00172] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pyg00010  Glycolysis / Gluconeogenesis
pyg00053  Ascorbate and aldarate metabolism
pyg00061  Fatty acid biosynthesis
pyg00071  Fatty acid degradation
pyg00190  Oxidative phosphorylation
pyg00220  Arginine biosynthesis
pyg00250  Alanine, aspartate and glutamate metabolism
pyg00280  Valine, leucine and isoleucine degradation
pyg00350  Tyrosine metabolism
pyg00470  D-Amino acid metabolism
pyg00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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