KEGG   PATHWAY: rbn00630
Entry
rbn00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Rubrivivax benzoatilyticus
Class
Metabolism; Carbohydrate metabolism
Pathway map
rbn00630  Glyoxylate and dicarboxylate metabolism
rbn00630

Module
rbn_M00012  Glyoxylate cycle [PATH:rbn00630]
rbn_M00621  Glycine cleavage system [PATH:rbn00630]
Other DBs
GO: 0046487 0043648
Organism
Rubrivivax benzoatilyticus [GN:rbn]
Gene
RBXJA2T_08565  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
RBXJA2T_05853  AMP-dependent synthetase and ligase [KO:K01895] [EC:6.2.1.1]
RBXJA2T_05903  acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
RBXJA2T_00704  malate synthase G [KO:K01638] [EC:2.3.3.9]
RBXJA2T_09929  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
RBXJA2T_09894  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
RBXJA2T_01525  aconitase [KO:K01681] [EC:4.2.1.3]
RBXJA2T_09939  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
RBXJA2T_02991  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
RBXJA2T_08245  putative acyltransferase [KO:K00626] [EC:2.3.1.9]
RBXJA2T_08415  Acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
RBXJA2T_08880  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
RBXJA2T_05008  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
RBXJA2T_08250  fabG; 3-ketoacyl-(acyl-carrier-protein) reductase [KO:K00023] [EC:1.1.1.36]
RBXJA2T_03391  propionyl-CoA carboxylase subunit alpha [KO:K01965] [EC:6.4.1.3]
RBXJA2T_09859  carboxyl transferase [KO:K01966] [EC:6.4.1.3 2.1.3.15]
RBXJA2T_09869  methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
RBXJA2T_19024  FAD linked oxidase domain-containing protein [KO:K00104] [EC:1.1.99.14]
RBXJA2T_19019  FAD linked oxidase [KO:K11472] [EC:1.1.99.14]
RBXJA2T_19009  glcF; glycolate oxidase iron-sulfur subunit [KO:K11473] [EC:1.1.99.14]
RBXJA2T_02852  putative 2-hydroxyacid dehydrogenase in PhoH-CsgG intergenic region [KO:K12972] [EC:1.1.1.79 1.1.1.81]
RBXJA2T_17392  putative 2-hydroxyacid dehydrogenase [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
RBXJA2T_03121  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
RBXJA2T_18673  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
RBXJA2T_07968  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
RBXJA2T_18708  rbcL; ribulose bisophosphate carboxylase [KO:K01601] [EC:4.1.1.39]
RBXJA2T_00355  rbcL; ribulose bisophosphate carboxylase [KO:K01601] [EC:4.1.1.39]
RBXJA2T_18703  ribulose-bisphosphate carboxylase [KO:K01602] [EC:4.1.1.39]
RBXJA2T_00360  ribulose bisphosphate carboxylase small subunit [KO:K01602] [EC:4.1.1.39]
RBXJA2T_08605  L-glutamine synthetase [KO:K01915] [EC:6.3.1.2]
RBXJA2T_08645  glutamine synthetase, type III [KO:K01915] [EC:6.3.1.2]
RBXJA2T_10991  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
RBXJA2T_12892  glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
RBXJA2T_12902  glycine cleavage system T protein [KO:K00605] [EC:2.1.2.10]
RBXJA2T_08200  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
RBXJA2T_08013  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
RBXJA2T_12897  glycine cleavage system H protein [KO:K02437]
RBXJA2T_03838  hydroxypyruvate reductase [KO:K11529] [EC:2.7.1.165]
RBXJA2T_07858  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
RBXJA2T_14891  2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
RBXJA2T_17484  NAD-dependent formate dehydrogenase subunit delta [KO:K00126] [EC:1.17.1.9]
RBXJA2T_07255  formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
RBXJA2T_07260  molybdopterin oxidoreductase Fe4S4 region [KO:K00123] [EC:1.17.1.9]
RBXJA2T_17479  formate dehydrogenase, alpha subunit [KO:K00123] [EC:1.17.1.9]
RBXJA2T_17474  NADH dehydrogenase (quinone) [KO:K00124]
RBXJA2T_07250  formate dehydrogenase subunit beta [KO:K00124]
RBXJA2T_17469  formate dehydrogenase subunit gamma [KO:K00127]
RBXJA2T_07245  formate dehydrogenase subunit gamma [KO:K00127]
RBXJA2T_14736  esterase/lipase-like protein [KO:K01432] [EC:3.5.1.9]
RBXJA2T_10816  putative cyclase [KO:K07130] [EC:3.5.1.9]
RBXJA2T_18819  formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
RBXJA2T_01490  N-formylglutamate amidohydrolase [KO:K01458] [EC:3.5.1.68]
RBXJA2T_00550  coenzyme A synthetase-like protein [KO:K22133] [EC:6.2.1.8]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
rbn00010  Glycolysis / Gluconeogenesis
rbn00020  Citrate cycle (TCA cycle)
rbn00030  Pentose phosphate pathway
rbn00053  Ascorbate and aldarate metabolism
rbn00071  Fatty acid degradation
rbn00230  Purine metabolism
rbn00250  Alanine, aspartate and glutamate metabolism
rbn00260  Glycine, serine and threonine metabolism
rbn00620  Pyruvate metabolism
rbn00710  Carbon fixation by Calvin cycle
rbn00750  Vitamin B6 metabolism
rbn00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

DBGET integrated database retrieval system