Entry
Name
ABC transporters - Rahnella bonaserana
Description
The ATP-binding cassette (ABC) transporters form one of the largest known protein families, and are widespread in bacteria, archaea, and eukaryotes. They couple ATP hydrolysis to active transport of a wide variety of substrates such as ions, sugars, lipids, sterols, peptides, proteins, and drugs. The structure of a prokaryotic ABC transporter usually consists of three components; typically two integral membrane proteins each having six transmembrane segments, two peripheral proteins that bind and hydrolyze ATP, and a periplasmic (or lipoprotein) substrate-binding protein. Many of the genes for the three components form operons as in fact observed in many bacterial and archaeal genomes. On the other hand, in a typical eukaryotic ABC transporter, the membrane spanning protein and the ATP-binding protein are fused, forming a multi-domain protein with the membrane-spanning domain (MSD) and the nucleotide-binding domain (NBD).
Class
Environmental Information Processing; Membrane transport
BRITE hierarchy
Pathway map
Ortholog table
Other DBs
Organism
Rahnella bonaserana [GN:
rbon ]
Gene
QNM34_05610 cysP; thiosulfate ABC transporter substrate-binding protein CysP [KO:K02048 ]
QNM34_19080 thiP; thiamine/thiamine pyrophosphate ABC transporter permease ThiP [KO:K02063 ]
QNM34_03790 proX; glycine betaine/L-proline ABC transporter substrate-binding protein ProX [KO:K02002 ]
QNM34_03795 proX; glycine betaine/L-proline ABC transporter substrate-binding protein ProX [KO:K02002 ]
QNM34_03800 proW; glycine betaine/L-proline ABC transporter permease ProW [KO:K02001 ]
QNM34_02620 malE; maltose/maltodextrin ABC transporter substrate-binding protein MalE [KO:K10108 ]
QNM34_02625 malK; maltose/maltodextrin ABC transporter ATP-binding protein MalK [KO:K10111 ] [EC:7.5.2.-]
QNM34_11500 ugpC; sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC [KO:K10112 ] [EC:7.5.2.-]
QNM34_19930 ugpC; sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC [KO:K10112 ] [EC:7.5.2.-]
QNM34_20190 mlaD; outer membrane lipid asymmetry maintenance protein MlaD [KO:K02067 ]
QNM34_20195 mlaE; lipid asymmetry maintenance ABC transporter permease subunit MlaE [KO:K02066 ]
QNM34_07275 mglB; galactose/glucose ABC transporter substrate-binding protein MglB [KO:K10540 ]
QNM34_07285 mglC; galactose/methyl galactoside ABC transporter permease MglC [KO:K10541 ]
QNM34_21280 ugpB; sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB [KO:K05813 ]
QNM34_22500 pstS; phosphate ABC transporter substrate-binding protein PstS [KO:K02040 ]
QNM34_06340 lysine/arginine/ornithine ABC transporter substrate-binding protein [KO:K10014 ]
QNM34_06980 glnH; glutamine ABC transporter substrate-binding protein GlnH [KO:K10036 ]
QNM34_13865 branched-chain amino acid ABC transporter substrate-binding protein [KO:K01999 ]
QNM34_21320 branched-chain amino acid ABC transporter substrate-binding protein [KO:K01999 ]
QNM34_21315 livH; high-affinity branched-chain amino acid ABC transporter permease LivH [KO:K01997 ]
QNM34_13855 livM; high-affinity branched-chain amino acid ABC transporter permease LivM [KO:K01998 ]
QNM34_21310 high-affinity branched-chain amino acid ABC transporter permease LivM [KO:K01998 ]
QNM34_21305 livG; high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG [KO:K01995 ]
QNM34_21300 livF; high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF [KO:K01996 ]
QNM34_09365 metQ; methionine ABC transporter substrate-binding lipoprotein MetQ [KO:K02073 ]
QNM34_13950 sapD; putrescine export ABC transporter ATP-binding protein SapD [KO:K19229 ]
QNM34_13955 sapF; putrescine export ABC transporter ATP-binding protein SapF [KO:K19230 ]
QNM34_07225 gsiB; glutathione ABC transporter substrate-binding protein GsiB [KO:K13889 ]
QNM34_02695 fepB; Fe2+-enterobactin ABC transporter substrate-binding protein [KO:K23185 ]
QNM34_18605 fhuD; Fe(3+)-hydroxamate ABC transporter substrate-binding protein FhuD [KO:K23227 ]
QNM34_18570 btuF; vitamin B12 ABC transporter substrate-binding protein BtuF [KO:K06858 ]
QNM34_15040 lolE; lipoprotein-releasing ABC transporter permease subunit LolE [KO:K09808 ]
QNM34_15050 lolC; lipoprotein-releasing ABC transporter permease subunit LolC [KO:K09808 ]
QNM34_15045 lolD; lipoprotein-releasing ABC transporter ATP-binding protein LolD [KO:K09810 ] [EC:7.6.2.-]
QNM34_17205 SmdA family multidrug ABC transporter permease/ATP-binding protein [KO:K18889 ]
QNM34_17200 SmdB family multidrug efflux ABC transporter permease/ATP-binding protein [KO:K18890 ]
QNM34_07415 cydC; cysteine/glutathione ABC transporter ATP-binding protein/permease CydC [KO:K16012 ]
QNM34_07420 cydD; cysteine/glutathione ABC transporter permease/ATP-binding protein CydD [KO:K16013 ]
Compound
C00093 sn-Glycerol 3-phosphate
C01153 Orthophosphoric monoester
C01181 4-Trimethylammoniobutanoate
C01279 4-Amino-5-hydroxymethyl-2-methylpyrimidine
C03557 2-Aminoethylphosphonate
C03611 Galactose oligosaccharide
C03619 Methyl beta-D-galactoside
C04114 (E)-4-(Trimethylammonio)but-2-enoate
C06705 Capsular polysaccharide
C19872 N-Formyl-4-amino-5-aminomethyl-2-methylpyrimidine
C20570 alpha-1,5-L-Arabinobiose
C20571 alpha-1,5-L-Arabinotriose
C20572 alpha-1,5-L-Arabinotetraose
Reference
Authors
Tomii K, Kanehisa M.
Title
A comparative analysis of ABC transporters in complete microbial genomes.
Journal
Reference
Authors
Sperandeo P, Lau FK, Carpentieri A, De Castro C, Molinaro A, Deho G, Silhavy TJ, Polissi A
Title
Functional analysis of the protein machinery required for transport of lipopolysaccharide to the outer membrane of Escherichia coli.
Journal
Reference
Authors
Ruiz N, Gronenberg LS, Kahne D, Silhavy TJ
Title
Identification of two inner-membrane proteins required for the transport of lipopolysaccharide to the outer membrane of Escherichia coli.
Journal
Reference
Authors
Omata T, Price GD, Badger MR, Okamura M, Gohta S, Ogawa T
Title
Identification of an ATP-binding cassette transporter involved in bicarbonate uptake in the cyanobacterium Synechococcus sp. strain PCC 7942.
Journal
Reference
Authors
Quintero MJ, Montesinos ML, Herrero A, Flores E
Title
Identification of genes encoding amino acid permeases by inactivation of selected ORFs from the Synechocystis genomic sequence.
Journal
Reference
Authors
Picossi S, Montesinos ML, Pernil R, Lichtle C, Herrero A, Flores E
Title
ABC-type neutral amino acid permease N-I is required for optimal diazotrophic growth and is repressed in the heterocysts of Anabaena sp. strain PCC 7120.
Journal
Reference
Authors
Valladares A, Montesinos ML, Herrero A, Flores E.
Title
An ABC-type, high-affinity urea permease identified in cyanobacteria.
Journal
Reference
Authors
Richard-Fogal CL, Frawley ER, Kranz RG
Title
Topology and function of CcmD in cytochrome c maturation.
Journal
Reference
Authors
Suzuki H, Koyanagi T, Izuka S, Onishi A, Kumagai H
Title
The yliA, -B, -C, and -D genes of Escherichia coli K-12 encode a novel glutathione importer with an ATP-binding cassette.
Journal
Reference
Authors
Novikova M, Metlitskaya A, Datsenko K, Kazakov T, Kazakov A, Wanner B, Severinov K
Title
The Escherichia coli Yej transporter is required for the uptake of translation inhibitor microcin C.
Journal
Reference
Authors
Tikhonova EB, Devroy VK, Lau SY, Zgurskaya HI
Title
Reconstitution of the Escherichia coli macrolide transporter: the periplasmic membrane fusion protein MacA stimulates the ATPase activity of MacB.
Journal
Reference
Authors
Yamanaka H, Kobayashi H, Takahashi E, Okamoto K
Title
MacAB is involved in the secretion of Escherichia coli heat-stable enterotoxin II.
Journal
KO pathway
LinkDB
All DBs