KEGG   PATHWAY: rcn00630
Entry
rcn00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Rosa chinensis (China rose)
Class
Metabolism; Carbohydrate metabolism
Pathway map
rcn00630  Glyoxylate and dicarboxylate metabolism
rcn00630

Module
rcn_M00012  Glyoxylate cycle [PATH:rcn00630]
rcn_M00532  Photorespiration [PATH:rcn00630]
rcn_M00621  Glycine cleavage system [PATH:rcn00630]
Other DBs
GO: 0046487 0043648
Organism
Rosa chinensis (China rose) [GN:rcn]
Gene
112190332  isocitrate lyase [KO:K01637] [EC:4.1.3.1 4.1.3.30]
112186315  acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal [KO:K01895] [EC:6.2.1.1]
112197158  acetate/butyrate--CoA ligase AAE7, peroxisomal [KO:K01913] [EC:6.2.1.1 6.2.1.2]
112179612  malate synthase, glyoxysomal [KO:K01638] [EC:2.3.3.9]
112198066  malate dehydrogenase [KO:K00025] [EC:1.1.1.37]
112201569  malate dehydrogenase, cytoplasmic isoform X1 [KO:K00025] [EC:1.1.1.37]
112170475  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
112177143  malate dehydrogenase, chloroplastic [KO:K00026] [EC:1.1.1.37]
112188803  malate dehydrogenase, glyoxysomal isoform X1 [KO:K00026] [EC:1.1.1.37]
112202187  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
112173298  citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
112190044  citrate synthase, glyoxysomal [KO:K01647] [EC:2.3.3.1]
112186046  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
112186109  aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
112164587  acetyl-CoA acetyltransferase, cytosolic 1 [KO:K00626] [EC:2.3.1.9]
112189280  acetyl-CoA acetyltransferase, cytosolic 1 [KO:K00626] [EC:2.3.1.9]
112174854  (S)-2-hydroxy-acid oxidase GLO1 isoform X1 [KO:K11517] [EC:1.1.3.15]
112174855  (S)-2-hydroxy-acid oxidase GLO1 isoform X1 [KO:K11517] [EC:1.1.3.15]
112174857  (S)-2-hydroxy-acid oxidase GLO1 isoform X1 [KO:K11517] [EC:1.1.3.15]
112165571  (S)-2-hydroxy-acid oxidase GLO1 isoform X1 [KO:K11517] [EC:1.1.3.15]
112167524  (S)-2-hydroxy-acid oxidase GLO1 isoform X1 [KO:K11517] [EC:1.1.3.15]
112183338  peroxisomal (S)-2-hydroxy-acid oxidase GLO4 isoform X1 [KO:K11517] [EC:1.1.3.15]
112183340  peroxisomal (S)-2-hydroxy-acid oxidase GLO4 isoform X1 [KO:K11517] [EC:1.1.3.15]
112176552  catalase isozyme 1 [KO:K03781] [EC:1.11.1.6]
112178879  glyoxylate/hydroxypyruvate reductase HPR3 isoform X1 [KO:K15919] [EC:1.1.1.79 1.1.1.81]
112178898  glyoxylate/hydroxypyruvate reductase HPR3 [KO:K15919] [EC:1.1.1.79 1.1.1.81]
112182413  glyoxylate/hydroxypyruvate reductase HPR3 [KO:K15919] [EC:1.1.1.79 1.1.1.81]
112178919  glyoxylate/hydroxypyruvate reductase HPR3 [KO:K15919] [EC:1.1.1.79 1.1.1.81]
112178893  glyoxylate/hydroxypyruvate reductase HPR3 [KO:K15919] [EC:1.1.1.79 1.1.1.81]
112173089  glyoxylate/hydroxypyruvate reductase HPR3 [KO:K15919] [EC:1.1.1.79 1.1.1.81]
112178909  glyoxylate/hydroxypyruvate reductase HPR3 [KO:K15919] [EC:1.1.1.79 1.1.1.81]
112188289  glyoxylate/succinic semialdehyde reductase 2, chloroplastic [KO:K18121] [EC:1.1.1.79 1.1.1.-]
112193088  glyoxylate/succinic semialdehyde reductase 1 [KO:K18121] [EC:1.1.1.79 1.1.1.-]
112177104  glycerate dehydrogenase [KO:K15893] [EC:1.1.1.29]
112193493  phosphoglycolate phosphatase 1A, chloroplastic [KO:K19269] [EC:3.1.3.18 3.1.3.48]
112201419  phosphoglycolate phosphatase 2 [KO:K19269] [EC:3.1.3.18 3.1.3.48]
112203769  LOW QUALITY PROTEIN: ribulose bisphosphate carboxylase large chain [KO:K01601] [EC:4.1.1.39]
112189957  ribulose bisphosphate carboxylase small chain, chloroplastic [KO:K01602] [EC:4.1.1.39]
112196410  ribulose bisphosphate carboxylase small chain clone 512 [KO:K01602] [EC:4.1.1.39]
112195799  ribulose bisphosphate carboxylase small chain 1, chloroplastic isoform X1 [KO:K01602] [EC:4.1.1.39]
112183598  serine--glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
112164231  serine--glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
112164572  serine--glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
112197874  glutamate--glyoxylate aminotransferase 2 [KO:K14272] [EC:2.6.1.4 2.6.1.2 2.6.1.44]
112188077  ferredoxin-dependent glutamate synthase, chloroplastic [KO:K00284] [EC:1.4.7.1]
112180616  glutamine synthetase cytosolic isozyme 2 [KO:K01915] [EC:6.3.1.2]
112198386  glutamine synthetase nodule isozyme [KO:K01915] [EC:6.3.1.2]
112192866  glutamine synthetase nodule isozyme [KO:K01915] [EC:6.3.1.2]
112197711  glutamine synthetase leaf isozyme, chloroplastic isoform X1 [KO:K01915] [EC:6.3.1.2]
112179503  serine hydroxymethyltransferase 3, chloroplastic [KO:K00600] [EC:2.1.2.1]
112176912  serine hydroxymethyltransferase 7 [KO:K00600] [EC:2.1.2.1]
112180751  serine hydroxymethyltransferase 7 [KO:K00600] [EC:2.1.2.1]
112178922  serine hydroxymethyltransferase 2, mitochondrial [KO:K00600] [EC:2.1.2.1]
112190380  serine hydroxymethyltransferase, mitochondrial [KO:K00600] [EC:2.1.2.1]
112196187  serine hydroxymethyltransferase 4 [KO:K00600] [EC:2.1.2.1]
112169891  glycine dehydrogenase (decarboxylating), mitochondrial [KO:K00281] [EC:1.4.4.2]
112165771  aminomethyltransferase, mitochondrial [KO:K00605] [EC:2.1.2.10]
112200427  dihydrolipoyl dehydrogenase 2, chloroplastic [KO:K00382] [EC:1.8.1.4]
112197861  dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
112179987  glycine cleavage system H protein, mitochondrial [KO:K02437]
112166318  glycine cleavage system H protein 2, mitochondrial [KO:K02437]
112187907  D-glycerate 3-kinase, chloroplastic isoform X1 [KO:K15918] [EC:2.7.1.31]
112186654  formate dehydrogenase, mitochondrial [KO:K00122] [EC:1.17.1.9]
112175941  formyltetrahydrofolate deformylase 1, mitochondrial isoform X1 [KO:K01433] [EC:3.5.1.10]
112186882  LOW QUALITY PROTEIN: formamidase-like [KO:K01455] [EC:3.5.1.49]
112176832  oxalate--CoA ligase [KO:K22133] [EC:6.2.1.8]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
rcn00010  Glycolysis / Gluconeogenesis
rcn00020  Citrate cycle (TCA cycle)
rcn00030  Pentose phosphate pathway
rcn00053  Ascorbate and aldarate metabolism
rcn00071  Fatty acid degradation
rcn00230  Purine metabolism
rcn00250  Alanine, aspartate and glutamate metabolism
rcn00260  Glycine, serine and threonine metabolism
rcn00620  Pyruvate metabolism
rcn00710  Carbon fixation by Calvin cycle
rcn00750  Vitamin B6 metabolism
rcn00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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